| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,080,424 – 16,080,527 |
| Length | 103 |
| Max. P | 0.946734 |
| Location | 16,080,424 – 16,080,527 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 85.55 |
| Shannon entropy | 0.27837 |
| G+C content | 0.44820 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -19.84 |
| Energy contribution | -22.12 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16080424 103 - 27905053 AGCAAUAACAAAAGCAACGCAUCGCUCAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACAUACACACAUCGAUGGCCAGCCA-GUCAGA ((((((((.....((((((((((((...........))))))).))))).(((....))))))))))).................(((((....)))-.))... ( -31.50, z-score = -2.86, R) >droSec1.super_27 146942 103 + 799419 AGCAAUAACAAAAGCAACGCAUCGCUCAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUGGCCAGCCA-GUCAGA ((((((((.....((((((((((((...........))))))).))))).(((....))))))))))).................(((((....)))-.))... ( -31.50, z-score = -2.79, R) >droSim1.chr3R 22120963 103 + 27517382 AGCAAUAACAAAAGCAACGCAUCGCUCAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUGGCCAGCCA-GUCAGA ((((((((.....((((((((((((...........))))))).))))).(((....))))))))))).................(((((....)))-.))... ( -31.50, z-score = -2.79, R) >droYak2.chr3R 4860774 103 - 28832112 AGCAAUAACAAAAGCAACGCAUCGCUUAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUGGCCAGCCA-GUCAGA ((((((((.....((((((((((((...........))))))).))))).(((....))))))))))).................(((((....)))-.))... ( -31.50, z-score = -2.89, R) >droEre2.scaffold_4770 12150472 103 + 17746568 AGCAAUAACAAAAGCAACGCAUCGCUUAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUGGCCAGCCA-GUCAGA ((((((((.....((((((((((((...........))))))).))))).(((....))))))))))).................(((((....)))-.))... ( -31.50, z-score = -2.89, R) >droAna3.scaffold_13340 2627010 85 - 23697760 ------------CGCAGCACAUCAUUUGAAUCUCAUUCGAUGCAGU-------GAGAGUUUUGUUGCUAAUUACACCACUACACAGCUGAGUUUUUAUUUCAGA ------------.((((((((.....))..(((((((......)))-------))))....))))))...................(((((.......))))). ( -17.00, z-score = -0.63, R) >consensus AGCAAUAACAAAAGCAACGCAUCGCUCAAAUCUCAUGCGAUGCAGUUGCCAGCGAGAGUUUUGUUGCUAAUUACACACACACAUCGAUGGCCAGCCA_GUCAGA ((((((((.....((((((((((((...........))))))).))))).(((....)))))))))))...................((((.......)))).. (-19.84 = -22.12 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:23 2011