| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,078,431 – 16,078,531 |
| Length | 100 |
| Max. P | 0.768026 |
| Location | 16,078,431 – 16,078,531 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.81 |
| Shannon entropy | 0.47736 |
| G+C content | 0.52734 |
| Mean single sequence MFE | -33.62 |
| Consensus MFE | -16.09 |
| Energy contribution | -15.94 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.768026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16078431 100 + 27905053 ------------AAUCCGGCCAACG-GUCCCACUUUGGGG----GUAUUUUCUCAAAUGGGGCAAAUGGUCUCCAGCAGAUUCUCACUUCAUGCUCGGAAUCGCACGGACGUGUCGC ------------..((((((((...-((((((.(((((((----(....))))))))))))))...)))))(((((((((........)).)))).))).......)))........ ( -35.90, z-score = -2.56, R) >droAna3.scaffold_13340 2625575 112 + 23697760 AAUUGGAACUCGAAGCUGAGCGGUGCGCCGUACUCCGUGGCGUGGCAGCAUUUUGUUAACGUAAAAUUAGUUUUAAAA----UUCAUUUUUCUCUCGG-UCCGAGCGGUCAUGUCGC ....(((.((((....))))(((....)))...)))((((((((((.(.((((((..(((.........))).)))))----).)......(.((((.-..)))).))))))))))) ( -26.60, z-score = 0.88, R) >droEre2.scaffold_4770 12148374 99 - 17746568 ------------AAUCUGAGCAACG-GUCCCACUGUGGGG-----UAAUUUCUCCAAUGGGGCAAACGGUCUCCAGUAGAUUCUCACUUAAUGCUCGAACUCGCACGGACGUGUCGC ------------....((((((...-((((((...(((((-----......))))).))))))....(((((.....))))).........))))))....(((((....))).)). ( -28.20, z-score = -0.67, R) >droYak2.chr3R 4858769 100 + 28832112 ------------GAUCUGAGCAACG-GUCCCACUUUGGGG----GUAAUUUCUCAAACGGGGAAAACGGUCUCCAGUAGAUUCUCACUUCAUGCUCGAACUCGCACGGACGUGUCGC ------------....((((((.((-.((((..(((((((----(....))))))))..))))...))((((.....))))..........))))))....(((((....))).)). ( -26.60, z-score = 0.04, R) >droSim1.chr3R 22118932 100 - 27517382 ------------AAUCCGACCAACG-GUCCCACUUUGGGG----GUAUUUUCUCAAGUGGGGCAAAUGGUCUCCAGCAGAUUCUCACUUCAUGCUCGGAAUCGCACGGACGUGUCGC ------------..((((((((...-(((((((((.((((----(....))))))))))))))...)))))(((((((((........)).)))).))).......)))........ ( -38.80, z-score = -3.35, R) >droSec1.super_27 144920 99 - 799419 ------------AAUCCGACCAACG-GUCCCACUU-GGGG----GUAUUUUCCCAAGUGGGGCAAAUGGUCUCCAGCAGAUUCUCACUUCAUGCUCGGAAUCGCACGGACGUGUCGC ------------..((((((((...-(((((((((-((((----(....))))))))))))))...)))))(((((((((........)).)))).))).......)))........ ( -45.60, z-score = -4.97, R) >consensus ____________AAUCCGACCAACG_GUCCCACUUUGGGG____GUAUUUUCUCAAAUGGGGCAAAUGGUCUCCAGCAGAUUCUCACUUCAUGCUCGGAAUCGCACGGACGUGUCGC ..............((((........((((((.(((((((..........)))))))))))))...((((.((.((((.............)))).)).))))..))))........ (-16.09 = -15.94 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:22 2011