| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,086,826 – 8,086,930 |
| Length | 104 |
| Max. P | 0.747129 |
| Location | 8,086,826 – 8,086,930 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.05 |
| Shannon entropy | 0.39429 |
| G+C content | 0.55706 |
| Mean single sequence MFE | -34.89 |
| Consensus MFE | -23.55 |
| Energy contribution | -25.72 |
| Covariance contribution | 2.17 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8086826 104 - 23011544 GACCGCCUCUGGUCCAUUGCCGUCCCGCUCGCACUGCCGCU-CUGGUUUCGGGCGGUUCUAUGCGGUUCGCACACGAAUGUAGAUCUC-----------CAUCUUUUCGGAAGGCA (((((....)))))...((((.(((.(((((((..((((((-(.......)))))))....)))))...))....(((...((((...-----------.)))).)))))).)))) ( -35.10, z-score = -0.74, R) >droEre2.scaffold_4929 16992349 111 - 26641161 GACCGC-UCUGGUCCAUUGCCAUCCCGCUCGCACUGCCGCA-CUGGUUUCGGGCGGUUCUGUGCGGUUCGCACACGAAUGUACAUCUCUAUG---UAUCCAUCUUUUCGGAAGGCA ((((..-...))))...((((.(((....(((((.(((((.-(((....))))))))...)))))(((((....)))))((((((....)))---)))..........))).)))) ( -38.60, z-score = -1.96, R) >droYak2.chr2L 10716859 111 - 22324452 GACCGCUU-UGGUCCAUUGCCGUCCCGCUCGCACAGCCGCU-CUGGUUUCGGGCGGUUCUGUGCGGUUCGCACACGAAUGUACAUCUCUAUG---UAUCCAUCUUUUCGGAAGGCA ((((....-.))))...((((.(((....((((((((((((-(.......))))))..)))))))(((((....)))))((((((....)))---)))..........))).)))) ( -40.00, z-score = -2.20, R) >droSec1.super_3 3583549 115 - 7220098 GACCGCCUCUGGUCCAUUGCCGUCCCGCUCGCACUGCCGCU-CUGGUUUCGGGCGGUUCUGUGCGGUUCGCACACGAAUGUACAUCUCUAUAUUAUAUCCAUCUUUUCGGAAGGCA (((((....)))))...((((.(((....(((((.((((((-(.......)))))))...)))))(((((....))))).............................))).)))) ( -37.70, z-score = -1.88, R) >droSim1.chr2L 7867456 115 - 22036055 GACCGCCGCUGGUCCAUUGCCGUCCCGCUCGCACUGCCGCU-CUGGUUUCGGGCGGUUCUGUGCGGUUCGCACACGAAUGUACAUCUCUAUAUUAUAUCCAUCUUUUCGGAAGGCA (((((....)))))...((((.(((....(((((.((((((-(.......)))))))...)))))(((((....))))).............................))).)))) ( -37.70, z-score = -1.33, R) >droAna3.scaffold_12916 11809279 94 + 16180835 -CGCUCAGAUCCUCCAUUUCGUUCUCA--GACCCGGCCACCACUAGUUUGGGGCAGUUCGGUUCGGUCUGCACAUGAAU---UAUC-------------CAUCUAUUUAAACA--- -.....((((.......(((((...((--((((..(((.(((......)))((....)))))..))))))...))))).---....-------------.)))).........--- ( -20.22, z-score = -0.53, R) >consensus GACCGCCUCUGGUCCAUUGCCGUCCCGCUCGCACUGCCGCU_CUGGUUUCGGGCGGUUCUGUGCGGUUCGCACACGAAUGUACAUCUCUAU____UAUCCAUCUUUUCGGAAGGCA (((((....)))))....(((.(((((((((....((((....))))..))))))((((((((((...)))))).)))).............................))).))). (-23.55 = -25.72 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:03 2011