| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,069,908 – 16,070,009 |
| Length | 101 |
| Max. P | 0.646831 |
| Location | 16,069,908 – 16,070,009 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.51 |
| Shannon entropy | 0.38324 |
| G+C content | 0.63263 |
| Mean single sequence MFE | -41.66 |
| Consensus MFE | -26.38 |
| Energy contribution | -25.33 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16069908 101 + 27905053 AAUCCACGCCCUGGCGCUGGAGGGUGGCGAUGUGGCCAGGGGCUACUGCUCCUGCGACGAGCAGUGGACGAACUCCUCCUCGCCGACGUCCACCACCACAU---------------- ..(((((((....))).)))).(((((.((((((((.((((((((((((((.......)))))))))........))))).))).)))))..)))))....---------------- ( -48.30, z-score = -2.77, R) >droSim1.chr3R 22114055 101 - 27517382 AAUCCACGCCCUGGCGCUGGAGGGUGGCGAUGUGGCCAGGGGCUACUGCUCCUGCGACGAGCAGUGGACGAACUCCUCCUCGCCGACGUCCACCACCACAU---------------- ..(((((((....))).)))).(((((.((((((((.((((((((((((((.......)))))))))........))))).))).)))))..)))))....---------------- ( -48.30, z-score = -2.77, R) >droSec1.super_27 140099 101 - 799419 AAUCCACGCCCUGGCGCUGGAGGGUGGCGAUGUGGCCAGGGGCUACUGCUCCUGCGACGAGCAGUGGACGAACUCCUCCUCGCCGACGUCCACCACCACAU---------------- ..(((((((....))).)))).(((((.((((((((.((((((((((((((.......)))))))))........))))).))).)))))..)))))....---------------- ( -48.30, z-score = -2.77, R) >droYak2.chr3R 4852457 98 + 28832112 AAUCCACGCCCUGGCGCUGGAGGGUGGCGAUGUGGCCAGGGGCUACUGCUCCUGCGACGAGCAGUGGACGAACUCCUCCUCGCCGACGUCCACCACCU------------------- ..(((((((....))).))))((((((.((((((((.((((((((((((((.......)))))))))........))))).))).)))))..))))))------------------- ( -48.50, z-score = -2.89, R) >droEre2.scaffold_4770 12143432 101 - 17746568 AAUCCACGCCCUGGCGCUGGAGGGUGGCGACGUGGCCAGGGGCUACUGCUCCUGCGACGAGCAGUGGACGAACUCCUCCUCGCCGACGUCCACCACCACCU---------------- ..(((((((....))).)))).(((((.((((((((.((((((((((((((.......)))))))))........))))).))).)))))..)))))....---------------- ( -50.10, z-score = -3.04, R) >droAna3.scaffold_13340 2621426 101 + 23697760 GAUCCACGCCCUGGCCCUGGAGGGUGGCGACGUGGCCAGAGGAUAUUGCUCUUGCGAUGAGCAGUGGACCAACUCCUCGUCGCCGACGUCCACGACCACGU---------------- ......((((...((((....))))))))((((((...(.(((..(((.....((((((((.(((......))).)))))))))))..))).)..))))))---------------- ( -41.70, z-score = -1.38, R) >dp4.chr2 3176260 101 - 30794189 GAUGCACGCUUUGGCUUUGGAGGGCGGCGAUGUGGCCAGGGGCUAUUGUUCCUGCGACGAACAGUGGACCAACUCGUCCUCGCCCACGUCCACGACCACAU---------------- ...........(((...((((.(..((((((((.((.((((((....)))))))).)))......((((......)))))))))..).))))...)))...---------------- ( -35.90, z-score = -0.21, R) >droPer1.super_6 3201971 101 - 6141320 GAUGCACGCUUUGGCUUUGGAGGGCGGCGACGUGGCCAGGGGCUAUUGUUCCUGCGACGAACAGUGGACCAACUCGUCCUCGCCCACGUCCACGACCACAU---------------- ...........(((...((((.(..((((((((.((.((((((....)))))))).)))......((((......)))))))))..).))))...)))...---------------- ( -37.80, z-score = -0.71, R) >droWil1.scaffold_181108 950777 117 - 4707319 AAUGCAUGCUUUGGCGCUGGAGGGCGGUGAUGUGGCCAGAGGAUAUUGCUCCUGUGAUGAGCAAUGGACCAACUCAACAUCAUCGCCAACCACAUCCACCUCAACCACAUCGGCGAC ..(((..((....))(.(((..(((((((((((.......(..((((((((.......))))))))..).......)))))))))))..))))...................))).. ( -38.04, z-score = -0.65, R) >droVir3.scaffold_13047 16584509 101 - 19223366 GAUUCAUGCUCUGGCGCUCGAGGGCGGCGACGUGGCACGCGGCUACUGUUCCUGCGAUGAACAGUGGACGAACUCAUCCUCACCCACAUCCACGACUACAU---------------- ...........((.((((....)))).)).(((((...(.(((((((((((.......)))))))))..((........))..)).)..))))).......---------------- ( -27.50, z-score = 0.67, R) >droMoj3.scaffold_6540 14267316 101 - 34148556 AAUUCACGCUCUGGCGCUCGAGGGCGGGGAUGUGGCGCGCGGCUACUGCUCCUGCGAUGAACAGUGGACCAACUUGCCCUCGCCCGCAUCCACGACCACAU---------------- ......((((((.(....).)))))).((((((((.(((.(((...((.(((.((........))))).))....)))..)))))))))))..........---------------- ( -37.50, z-score = -0.42, R) >droGri2.scaffold_15074 537687 95 - 7742996 GUUGCAUGCUUUGGCGCUGGAGGGUGGCGAUGUGGCACGAGGCUAUUGCUCAUGCGAUGAGCAGUGGACAACCAACUCAUCGUCGUCGCCCACAU---------------------- ....(((((....))).))..((((((((((...(((.(((.(....)))).)))((((((...(((....))).))))))))))))))))....---------------------- ( -38.00, z-score = -1.24, R) >consensus AAUCCACGCCCUGGCGCUGGAGGGUGGCGAUGUGGCCAGGGGCUACUGCUCCUGCGACGAGCAGUGGACGAACUCCUCCUCGCCGACGUCCACCACCACAU________________ ......((((((........))))))(.((((((((..(((.(((((((((.......))))))))).....)))......))).)))))).......................... (-26.38 = -25.33 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:21 2011