| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,053,513 – 16,053,603 |
| Length | 90 |
| Max. P | 0.607157 |
| Location | 16,053,513 – 16,053,603 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 81.72 |
| Shannon entropy | 0.39129 |
| G+C content | 0.58148 |
| Mean single sequence MFE | -34.66 |
| Consensus MFE | -21.52 |
| Energy contribution | -20.49 |
| Covariance contribution | -1.03 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16053513 90 - 27905053 CAAAGUGGCCGCAUGAUGGAGACCGCCCGACUUGGGCAGCGUCAUCAUGCCGGGAUUGUAGCUAACGCUGCUGCCGGACACCACCACGGA ....((((..((((((((..(.(.((((.....)))).))..))))))))(.((...(((((....)))))..)).)......))))... ( -39.60, z-score = -2.72, R) >droSim1.chr3R 22089402 90 + 27517382 CAAAGUGGCCGCAUGAUGGAGACCGCCCGACUUGGGCAGCGUCAUCAUGCCGGGAUUGUAGCUCACGCUGCUGCCGGACACCACCACGGA ....((((..((((((((..(.(.((((.....)))).))..))))))))(.((...(((((....)))))..)).)......))))... ( -37.60, z-score = -1.73, R) >droSec1.super_27 121465 90 + 799419 CAAAGUGGCCGCAUGAUGGAGACCGCCCGACUUGGGCAGCGUCAUCAUGCCGGGAUUGUAGCUCACGCUGCUGCCGGAGACCACCACGGA ....((((..((((((((..(.(.((((.....)))).))..))))))))(.((...(((((....)))))..)).)......))))... ( -37.60, z-score = -1.67, R) >droYak2.chr3R 4824291 90 - 28832112 CAAAGUGGCCGCGUGGUGGAGGCCGCCCGACUUGGGCAGCGUCAUCAUGCCGGGAUUGUAGCUCACGCUGCUGCCAGACACCACCACGGA ....((((..(((((((((..((.((((.....)))).)).)))))))))..((...(((((....)))))..))........))))... ( -37.90, z-score = -0.56, R) >droEre2.scaffold_4770 12127551 90 + 17746568 CAAGGUGGCCGCGUGGUGCAGGCCGCCCGACUUGGGCAGCGUCAUCAUGCCGGGAUUGUAGCUCACGCUGCUGCCGGACACCACCACGGA ...(((((((((((((((.(.((.((((.....)))).)).)))))))))..((...(((((....)))))..))))...)))))..... ( -42.10, z-score = -1.03, R) >droAna3.scaffold_13340 2605240 90 - 23697760 CAAAGUGGCCGCAUGGUGCAGCCCGCCUGACUUGGGCAGCGUCAUCAUUCCGGGAUUGUAGCUCACACUGCUGCCGGAGACGACAACGGA ..........(.(((..((.(((((.......))))).))..))))..((((.....(((((.......)))))((....))....)))) ( -28.70, z-score = 0.88, R) >dp4.chr2 3156921 90 + 30794189 CAGUGUUGCCGCAUGAUGCAAGGUUCCCGAUUUGGGGAGCGUCAUCAUGCCGGGAUUGUAGCUGACGCUAUUGCCGGACACGACAACCGA ..(((((...((((((((..(.((((((......)))))).)))))))))(((.(..(((((....)))))).))))))))......... ( -35.60, z-score = -2.15, R) >droPer1.super_6 3180129 90 + 6141320 CAGUGUUGCCGCAUGAUGCAAGGUUCCCGAUUUGGGGAGCGUCAUCAUGCCGGGAUUGUAGCUGACGCUAUUGCCGGACACGACAACGGA ..(((((...((((((((..(.((((((......)))))).)))))))))(((.(..(((((....)))))).))))))))......... ( -35.60, z-score = -2.07, R) >droWil1.scaffold_181108 935687 90 + 4707319 UAAAGUGGCCGCAUGAUGAAGUGUACCCGACUUGGGUAACGUCAUCAUGCCAGGAUUGUAGCUAACGGUAUUGCCGGAAACAACAACAGA ....((..(((((((((((.((.(((((.....))))))).)))))))))..((...(((.(....).)))..))))..))......... ( -32.20, z-score = -3.29, R) >droVir3.scaffold_13047 16565415 90 + 19223366 CAAAGUUGCGGCAUGAUGCAAUUGACUUGCCUUGGGCAAUGUCAUUAGUCCGGGAUUGUAGCUAACGCUGCUGCCUGAGACAACAACCGA ...(((((((......)))))))((((((((...))))).)))....(((((((...(((((....)))))..)))).)))......... ( -33.50, z-score = -2.94, R) >droMoj3.scaffold_6540 14243643 90 + 34148556 CAGAGCUCCGGAAUGGUGCAAUUGGCUUGCCUUGGGCAAAGUCAUUAGGCCGGGAUUGUAGCUAACGCUGCUGCCUGACACAACAACAGA (((.(((((((..(((((...(((.((......)).)))...)))))..)))))...(((((....))))).)))))............. ( -29.10, z-score = -0.41, R) >droGri2.scaffold_15074 517168 90 + 7742996 UAAUGUUGCCGCAUGAUGCAAUUGGCUUGCCUUUGGCAAUGUCAUUAGGCCAGGAUUGUAGCUGACGCUGCUGCCAGACACAACAACGGA ...(((((((((.....))...(((((((((...))))).))))...)))..((...(((((....)))))..)).)))).......... ( -26.40, z-score = 0.10, R) >consensus CAAAGUGGCCGCAUGAUGCAGGCCGCCCGACUUGGGCAGCGUCAUCAUGCCGGGAUUGUAGCUCACGCUGCUGCCGGACACCACAACGGA ....((((....((((((......((((.....)))).....))))))..(.((...(((((....)))))..)).)......))))... (-21.52 = -20.49 + -1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:20 2011