| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,047,022 – 16,047,112 |
| Length | 90 |
| Max. P | 0.975931 |
| Location | 16,047,022 – 16,047,112 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 85.77 |
| Shannon entropy | 0.26616 |
| G+C content | 0.34159 |
| Mean single sequence MFE | -16.96 |
| Consensus MFE | -13.70 |
| Energy contribution | -13.54 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16047022 90 - 27905053 -------------------UGAAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA -------------------((((...((((.......))))...................(((((((((..............)))))))))..........))))... ( -17.64, z-score = -2.64, R) >droSim1.chr3R 22082038 90 + 27517382 -------------------UGAAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA -------------------((((...((((.......))))...................(((((((((..............)))))))))..........))))... ( -17.64, z-score = -2.64, R) >droSec1.super_27 114153 90 + 799419 -------------------UGAAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA -------------------((((...((((.......))))...................(((((((((..............)))))))))..........))))... ( -17.64, z-score = -2.64, R) >droYak2.chr3R 4816422 90 - 28832112 -------------------UGGAAAAAGGUUACACACACCUAAUGCUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA -------------------((((...((((.......))))...................(((((((((..............)))))))))..........))))... ( -17.14, z-score = -2.07, R) >droEre2.scaffold_4770 12120637 90 + 17746568 -------------------UGAAAAAAGGUUACACACACCUAAUGCUUAUACAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA -------------------((((...((((.......))))...................(((((((((..............)))))))))..........))))... ( -17.64, z-score = -2.85, R) >droAna3.scaffold_13340 2599096 109 - 23697760 GGCGGAGGCCCCCAUCAGGGGAAAAAAGGUUACACACACUUAAUACUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA (((....)))(((....)))(((..(((((.....)).)))...................(((((((((..............)))))))))..........))).... ( -21.94, z-score = -1.36, R) >dp4.chr2 3150898 90 + 30794189 ------------------CAGAAAAAAGGUUACACACACUUAAUACUUGUAGAGAUUACAGUUGAGUGCAUUUCC-AAAGUCAGCACUCGGCACAAUAUAAAUUCAAAA ------------------..(((........................(((((...)))))(((((((((......-.......)))))))))..........))).... ( -14.92, z-score = -1.29, R) >droPer1.super_6 3174087 90 + 6141320 ------------------CAGAAAAAAGGUUACACACACUUAAUACUUGUAGAGAUUACAGUUGAGUGCAUUUCC-AAAGUCAGCACUCGGCACAAUAUAAAUUCAAAA ------------------..(((........................(((((...)))))(((((((((......-.......)))))))))..........))).... ( -14.92, z-score = -1.29, R) >droMoj3.scaffold_6540 14236218 79 + 34148556 ------------------------CGAGCAGUCACAUACUUAAUAC------AGAUUACAGUUGAGUGCAUUUUCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA ------------------------.(((.((((.............------.))))...(((((((((..............)))))))))..........))).... ( -13.88, z-score = -2.43, R) >droGri2.scaffold_15074 509815 79 + 7742996 ------------------------CAAGUAUUCACAUACUUAAUAC------AGAUUACAGUUGAGUGCAUUUUCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA ------------------------.((((((....)))))).....------........(((((((((..............)))))))))................. ( -16.24, z-score = -4.26, R) >consensus ___________________UGAAAAAAGGUUACACACACCUAAUACUUAUAGAGAUUACAGUUGAGUGCAUUUCCAAAAGUCAGCACUCGACACAAUAUAAAUUCAAAA ............................................................(((((((((..............)))))))))................. (-13.70 = -13.54 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:19 2011