| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,029,849 – 16,029,954 |
| Length | 105 |
| Max. P | 0.620943 |
| Location | 16,029,849 – 16,029,954 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 77.56 |
| Shannon entropy | 0.31005 |
| G+C content | 0.30121 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -9.93 |
| Energy contribution | -10.27 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16029849 105 - 27905053 AUGUCGUGUGCAGAACGAAAGGUUUGUUUAUAUAGGGCCACUUUAUAUGGGGUUGCUUUAUUAAAUAUAAAGAGUACACAAAUGCCAAAUGAUUACUUUAAUCAU .....((((((....(....)...((((((.(((((((.(((((....))))).)))))))))))))......)))))).........(((((((...))))))) ( -24.20, z-score = -1.67, R) >droSec1.super_27 96946 84 + 799419 GUGUCGUGUGCAGAACGAAAGGUUUG---------------UUUAUAACGGGUUCCUUUAUAAAAUAUAAAG-GAACACAAAUAAAAAAUGUUUAUUUUU----- .(((..((.(((((.(....).))))---------------).))..))).(((((((((((...)))))))-))))..(((((((.....)))))))..----- ( -21.00, z-score = -3.53, R) >droSim1.chr3R 22064613 102 + 27517382 GUGUCGUGUGCAGAACGAAAGGUUUGUUUAUAUAGGGCCACUUUAUAAGUGGUUCCUUUAUUAAAUAUAAAG-GAACACAAAUCAAAAAUGUUUAUUUUAAUA-- ((((.(((.(((((.(....).))))).))).....((((((.....))))))((((((((.....))))))-))))))........................-- ( -23.90, z-score = -2.71, R) >consensus GUGUCGUGUGCAGAACGAAAGGUUUGUUUAUAUAGGGCCACUUUAUAAGGGGUUCCUUUAUUAAAUAUAAAG_GAACACAAAUAAAAAAUGUUUAUUUUAAU___ .....(((((((((.(....).)))))............................((((((.....))))))...)))).......................... ( -9.93 = -10.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:17 2011