| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,021,518 – 16,021,609 |
| Length | 91 |
| Max. P | 0.669637 |
| Location | 16,021,518 – 16,021,609 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 60.14 |
| Shannon entropy | 0.71615 |
| G+C content | 0.36430 |
| Mean single sequence MFE | -14.61 |
| Consensus MFE | -7.41 |
| Energy contribution | -7.79 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.43 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.669637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16021518 91 + 27905053 ACAAAAGGGUCGAAUGUCAAGUGCUGUAAAA-UUGCAUUGCUGCCCUACCUUUUU---------GUAUUCU-------UUUCCAACAAAUAUAUCUCGCCUGUAUAAC--------- ((((((((((.........(((((.......-..)))))........))))))))---------)).....-------..............................--------- ( -14.63, z-score = -0.77, R) >droAna3.scaffold_13340 2572806 87 + 23697760 AAAAGGAGGCCGAAUGUCAAGUGCUGUAAAAAUUGCAUUGCUUUUUUGCCUCUCC------------UUCU---------CACUCAAACUAUUGGUUAGUUUUUCAUC--------- ....((((((.(((.....(((((..........)))))....))).))))))..------------....---------.....((((((.....))))))......--------- ( -17.60, z-score = -1.10, R) >droEre2.scaffold_4770 12094586 115 - 17746568 ACAAAAGGGUCGAAUGUCAAGUGCUGUAAAA-UUGCAUUGCUUCCCCACCUUUUUU-CCUCGCCGUCUUCUUGUAUUUUCUCCUACAAAUAUACCUCGCUCUCCUUGUCUAUAUAAC ..((((((((.(((.((..(((((.......-..))))))))))...)))))))).-....((.((.(..(((((........)))))..).))...)).................. ( -12.90, z-score = -0.26, R) >droYak2.chr3R_random 2640831 116 + 3277457 ACAAAAGGGUCGAAUGUCAAGUGCUGUAAAA-UUGCAUAGCUUGCCCACCUUUUUUGUCUCACUGUCUUCUAGUAUUCUUUCCUACAAAUAUUUUUCGCUCUUCUUGCCUGUAUAAC .((((((((.((((...(((((..((((...-.))))..))))).................((((.....))))....................))))))))).))).......... ( -15.10, z-score = 0.32, R) >droSec1.super_27 88701 91 - 799419 ACAAAAGGGUCGAAUGUCAAGUGCUGUAAAA-UUGCAUUGCUGCCCUACCUUUUU---------GUAUUCU-------UUUCCAACAAAUAUAUCUCGCCUGUAUAAC--------- ((((((((((.........(((((.......-..)))))........))))))))---------)).....-------..............................--------- ( -14.63, z-score = -0.77, R) >droSim1.chr3R 22056380 91 - 27517382 ACAAAAGGGUCGAAUGUCAAGUGCUGUAAAA-UUGCAUUGCUGCCCUACCUUUUU---------GUAUUCU-------UUUCCAACAAAUAUAUCUCGCCUGUAUAAC--------- ((((((((((.........(((((.......-..)))))........))))))))---------)).....-------..............................--------- ( -14.63, z-score = -0.77, R) >droMoj3.scaffold_6540 14205609 84 - 34148556 --------ACUAAAU--UAAUUCUAAAGGGAAGUAGAUCUCUCUUUUAUAUUUAUA--------GUAUGUAG------UUUACCAUAUAUGUACAGAGGAUGCUUUAU--------- --------.......--............(((((..(((.((((..(((((.(((.--------(((.....------..))).))).))))).))))))))))))..--------- ( -12.80, z-score = 0.36, R) >consensus ACAAAAGGGUCGAAUGUCAAGUGCUGUAAAA_UUGCAUUGCUGCCCUACCUUUUU_________GUAUUCU_______UUUCCAACAAAUAUAUCUCGCCUGUAUAAC_________ ..((((((((.........(((((..........)))))........)))))))).............................................................. ( -7.41 = -7.79 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:13 2011