| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,008,507 – 16,008,620 |
| Length | 113 |
| Max. P | 0.650933 |
| Location | 16,008,507 – 16,008,620 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.65 |
| Shannon entropy | 0.33249 |
| G+C content | 0.28818 |
| Mean single sequence MFE | -21.37 |
| Consensus MFE | -13.63 |
| Energy contribution | -15.20 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16008507 113 + 27905053 AUUUAUUGCAUUCACUCUAAUUAGGUUUAAUACUCUUUAAGUCUAAAGAAGAUUUCAUUUAAUAUUAAAUCAUGAAAU--UAGAAGACCACAAUCUGCUUUUCAGUGCCA-UGUAG ......(((((.((((....((((..((((......))))..))))....((((((((.............)))))))--).(((((.((.....)).)))))))))..)-)))). ( -17.62, z-score = -0.82, R) >droEre2.scaffold_4770 12080792 114 - 17746568 ACUGAUUGCACUCAAUCUAAUUUAAUUUACUACUGCUUAGUUGUAAAGAGGAUUUA--UCAACAUCUAAUCAUGAAUUUUCUGAAGAGCACUAUGUUUUUUUCAGUGCCAAUACAG .(((((((((((..............((((.(((....))).))))((((((((((--(............)))))))))))(((((((.....)))))))..)))).)))).))) ( -20.40, z-score = -0.81, R) >droSec1.super_27 75460 113 - 799419 AUUUAUUGCAUUAACCCUAAUUAGGCUUAAUAGUCUUAAAGUCUAAAGAGGUUUUCAUUUAAUAUUAAAUCAUCAAAU--CAGAAGAGCACAAUGUGCUUUUCAGUGCCA-UAUAA ...(((.(((((...(((..((((((((..........))))))))..)))...........................--..(((((((((...)))))))))))))).)-))... ( -26.10, z-score = -3.55, R) >consensus AUUUAUUGCAUUCACUCUAAUUAGGUUUAAUACUCUUUAAGUCUAAAGAGGAUUUCAUUUAAUAUUAAAUCAUGAAAU__CAGAAGAGCACAAUGUGCUUUUCAGUGCCA_UAUAG .......(((((...(((..((((((((((......))))))))))..)))...............................((((((((.....)))))))))))))........ (-13.63 = -15.20 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:11 2011