| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,008,325 – 16,008,428 |
| Length | 103 |
| Max. P | 0.857566 |
| Location | 16,008,325 – 16,008,428 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 64.20 |
| Shannon entropy | 0.68186 |
| G+C content | 0.43396 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -15.48 |
| Energy contribution | -16.55 |
| Covariance contribution | 1.07 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.45 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16008325 103 - 27905053 ----UUUAGUA-AGCUUCACA-UUUUUCAGUGUUCCAUA--GUUUAUUGGGGCA-AAAGGUGCUGCCAUUUAUGUUGGCUUUCGUUGGGUUGUUCGUGGUUGGGUGGAACGC ----.......-.........-.......(((((((((.--.........((((-.....)))).(((.(((((.((((((.....))))))..))))).)))))))))))) ( -23.30, z-score = 0.02, R) >droSim1.chr3R 22043050 104 + 27517382 ----UUUUGUAAGGCCUCACA-UUUUUCAGUGUUCCAUA--GUUUAUUGGGGCA-AAAGGUGCUGCCAUUUAUGUUGGCUUUCAUUGGGUUGUUCGUGGGUGGGUGGGACGC ----.................-.......(((((((((.--(..(((..(((((-(..((((..((((.......))))...))))...)))))))))..)..))))))))) ( -26.60, z-score = -0.21, R) >droSec1.super_27 75277 104 + 799419 ----UUUUGUAAGGCCUCACA-UUUUUCAGUGUUCCAUA--GUUUAGUAGGGCA-AAAGGUGCUGCCAUUUAUGUUGGCUUUCAUUGGGUUGUUCGUGGGUGGGUGGGACGC ----.................-.......(((((((((.--.........((((-.....)))).(((((((((.((((((.....))))))..)))))))))))))))))) ( -26.40, z-score = -0.32, R) >droYak2.chr3R_random 269066 111 - 3277457 UUUUCAAGGUACAUUUUUUCAGUGUUUCAGCGUUCCAUAUUGCAUAUUGGGGCAAAAAGGUCCUCCCAUUUAAGUUGCCUU-CAUUGGGUUUUUCGUGUGUGGGUGGGACAC .......((.(((((.....))))).))...(((((((.(..(((((.(((((......)))))((((...(((....)))-...))))......)))))..)))))))).. ( -28.40, z-score = -1.17, R) >droEre2.scaffold_4770 12080380 88 + 17746568 ----------------------UUUUUUAGUGUUCCAUA--GCAUAUUGGGGCAGAAAGGUGCUGCCAUUUAUGUUGGCUUGCAUUGGGUUGCUCGUGGGUGGCUGGGGCAC ----------------------.......((((((((..--.(((....((((((...(((((.((((.......))))..)))))...))))))....)))..)))))))) ( -31.70, z-score = -2.21, R) >droAna3.scaffold_13340 2560239 103 - 23697760 ----UUUAUUCUGUUUCUUUUUUGCCAGAGGAGUCCAAA--GAUUAAAAAACAGUUAACAUUUAUUAAGUCAAAUGAGUUU-CGAUGGUUUUGCUUUGAGGUUGUGCUGU-- ----((((.(((....((((((.....)))))).....)--)).))))..((((((((((((((((......)))))))((-(((.((.....))))))))))).)))))-- ( -15.30, z-score = 1.20, R) >consensus ____UUUAGUA_GGCUUCACA_UUUUUCAGUGUUCCAUA__GUUUAUUGGGGCA_AAAGGUGCUGCCAUUUAUGUUGGCUUUCAUUGGGUUGUUCGUGGGUGGGUGGGACGC .............................(((((((((............((((......)))).(((((((((..(((((.....)))))...)))))))))))))))))) (-15.48 = -16.55 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:10 2011