| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,997,251 – 15,997,344 |
| Length | 93 |
| Max. P | 0.710629 |
| Location | 15,997,251 – 15,997,344 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 65.48 |
| Shannon entropy | 0.69911 |
| G+C content | 0.48402 |
| Mean single sequence MFE | -31.71 |
| Consensus MFE | -9.04 |
| Energy contribution | -9.50 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.710629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15997251 93 + 27905053 ---------GUCAGCC-CCCUUGUGUUUGGGCAAAAUGCUCGUUUCACU--------UGGUUAAUAUUGGCCAGCAUCCGCCAAUUGGCAGCUGGCCAAAUGACAAAUUGA ---------((((...-.((..(((..(((((.....)))))...))).--------.))......(((((((((....(((....))).))))))))).))))....... ( -37.10, z-score = -3.50, R) >droSim1.chr3R 22031842 93 - 27517382 ---------GUCAGCC-CCCUUGUGUUUGGGCAAAAAGCUCGUUUCACU--------UGGUUAAUGUUGGCCAGCAUCCGCCAAUUGGCAGCUGGCCAAAUGACAAAUUGA ---------((((...-.((..(((..(((((.....)))))...))).--------.))......(((((((((....(((....))).))))))))).))))....... ( -36.70, z-score = -3.09, R) >droSec1.super_27 63987 93 - 799419 ---------GUCAGCC-GCCUUGUGUUUGGGCAAAAUGCUCGUUUCACU--------UGGUUAAUGUUGGCCAGCAUCCGCCAAUUGGCAGCUGGCCAAAUGACAAAUUGA ---------((((...-(((..(((..(((((.....)))))...))).--------.))).....(((((((((....(((....))).))))))))).))))....... ( -38.50, z-score = -3.36, R) >droYak2.chr3R 4801065 84 + 28832112 ---------GUCA-CC-CCCUUGUGUUUGG--------CUCGUCUCACU--------UGGUUAAUGUUGGCCAGCAUCCGCCAAUUGGCAGCUGGCCAAAUGACAAAUUGA ---------((((-..-.((..(((...((--------....)).))).--------.))......(((((((((....(((....))).))))))))).))))....... ( -29.80, z-score = -2.51, R) >droEre2.scaffold_4770 12069522 92 - 17746568 ---------GUCAGCC-CCCUUGUGUUUGGGCAAAAUGCUCGUUUCACU--------UGGUUAAUGUUGGCCAGCAUCCGCCAAUUGGCAGCUGGCCAA-UGACAAAUUGA ---------(((....-.((..(((..(((((.....)))))...))).--------.)).....((((((((((....(((....))).)))))))))-))))....... ( -37.30, z-score = -3.25, R) >droAna3.scaffold_13340 2551105 100 + 23697760 ---------GUCAGCCGCCCCUGUGUUUGGGCAAAAGUUUCAUCCCGUUGGCCU--UUGGUUAAUGUUGGUCGGCAUCCGCCAAUUGGCAGGAGUCCAAAUGACAAAUUGA ---------(((((((((((........))))...........((((((((((.--..))))))))..))..))).((((((....))).))).......))))....... ( -31.90, z-score = -0.92, R) >droWil1.scaffold_181108 879833 103 - 4707319 GUUUGCCUCGCCACAUCUUUUCCCCUUCCUGACACCCCUCCAUUCCAUCAUACAUUUCAGUUGCUGUUGGUUAAUGUUGGCCAACAG--------CCAAAUGACAAAUUGA ...............................................(((......(((...(((((((((((....))))))))))--------)....))).....))) ( -17.50, z-score = -0.76, R) >droVir3.scaffold_13047 16502515 102 - 19223366 ----GUCUGCUUAGUCGUGUGGGCGCCAAAUGCACAUUUUAAUUCAAUUUGU-----UGGUUAAUGUUGGGCGGCGGCCAGCAAUUGGCAGUGUUCCAAAUGACAAAUUAA ----.........(((((.((((((((((.((((((((.....((((....)-----)))..)))))..(((....))).))).))))).))...))).)))))....... ( -27.60, z-score = -0.04, R) >droMoj3.scaffold_6540 14180554 107 - 34148556 ----GUCUGCUUAGUCGUGUGGGCGCCGAAUGCACAUUUUUAUUUCAUUUGCUUGGUUGGUUAAUGUUGGGUGGCGGUCGCCAAUUGGCACUGCUCCAAAUGACAAAUUGA ----.........(((((.((((((((.(....(((((..(...(((......)))...)..)))))).))))(((((.(((....)))))))))))).)))))....... ( -29.80, z-score = 0.01, R) >droGri2.scaffold_15074 443492 102 - 7742996 ----GUGUUUUUAGUCGCGUGGGCGCCGCAUGCACAUUUUUAUUUCAUUUGC-----UGGUUAAUGUUGGGCGGCGACCGCCAAUUGGCAGUGGUCCAAAUGACAAAUUGA ----.........((((..((((((((((....(((((......(((.....-----)))..)))))...))))).((.(((....))).)).)))))..))))....... ( -30.90, z-score = -0.13, R) >consensus _________GUCAGCC_CCCUUGUGUUUGGGCAAAAUGCUCAUUUCACU________UGGUUAAUGUUGGCCAGCAUCCGCCAAUUGGCAGCUGGCCAAAUGACAAAUUGA ...........................................................((((...(((((..((....(((....))).))..))))).))))....... ( -9.04 = -9.50 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:09 2011