| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,973,125 – 15,973,216 |
| Length | 91 |
| Max. P | 0.984734 |
| Location | 15,973,125 – 15,973,216 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.75 |
| Shannon entropy | 0.22708 |
| G+C content | 0.29465 |
| Mean single sequence MFE | -20.55 |
| Consensus MFE | -15.86 |
| Energy contribution | -16.08 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.984734 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 15973125 91 - 27905053 -------------------------AGCAGAUGGCAACG----AGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU -------------------------.(((((((((...(----((........)))....(((((.((......)).))))).........................))))))))).... ( -20.80, z-score = -3.44, R) >droSim1.chr3R 22016261 91 + 27517382 -------------------------AGCAGAUGGCAACG----AGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU -------------------------.(((((((((...(----((........)))....(((((.((......)).))))).........................))))))))).... ( -20.80, z-score = -3.44, R) >droSec1.super_27 44508 91 + 799419 -------------------------AGCAGAUGGCAACG----AGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU -------------------------.(((((((((...(----((........)))....(((((.((......)).))))).........................))))))))).... ( -20.80, z-score = -3.44, R) >droYak2.chr3R 4782762 91 - 28832112 -------------------------AGCAGAUGGCAAUG----AGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU -------------------------.(((((((((.(((----((((...........((((........))))((((((...........)))))).)))))))..))))))))).... ( -21.90, z-score = -3.43, R) >droEre2.scaffold_4770 12053861 91 + 17746568 -------------------------AGCAGAUGGCAACG----AGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU -------------------------.(((((((((...(----((........)))....(((((.((......)).))))).........................))))))))).... ( -20.80, z-score = -3.44, R) >droAna3.scaffold_13340 2537543 91 - 23697760 -------------------------AGCAGAUGGCAACA----AGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU -------------------------.(((((((((....----.(((((.........((((........))))((((((...........)))))).)))))....))))))))).... ( -18.90, z-score = -2.86, R) >dp4.chr2 3089887 95 + 30794189 ------------------------UGGCAGAUGGCAACAA-GAAGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU ------------------------..(((((((((.....-(((((............((((........))))((((((...........)))))).)))))....))))))))).... ( -18.80, z-score = -1.89, R) >droPer1.super_6 3113251 95 + 6141320 ------------------------UGGCAGAUGGCAACAA-GAAGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU ------------------------..(((((((((.....-(((((............((((........))))((((((...........)))))).)))))....))))))))).... ( -18.80, z-score = -1.89, R) >droWil1.scaffold_181108 3845243 120 - 4707319 UGGCAGACGGCUACAAAAUAAAGACCGAAACCAACCAAAACGAAAAAAAAUUCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGGCAAAUUAUUUUCAUAAGCCAUUUGCAUUU ..(((((.((((..............(....).........(((((............((((........))))(((((((.........))))))).)))))...)))).))))).... ( -17.00, z-score = -0.91, R) >droMoj3.scaffold_6540 19984185 94 - 34148556 -------------------------GGCAGAUGGCCCGAA-AAUGAAAAAUUCCUCAAUAUGCAAUUUACCAUAAAUUUAUAAUUUACUGGCAAAUUAUUUUCAUAAGCCAUUUGCAUUU -------------------------.(((((((((..(((-(((((.(((((.(.......).))))).((((((((.....))))).)))....))))))))....))))))))).... ( -22.30, z-score = -2.70, R) >droGri2.scaffold_15074 7315088 94 - 7742996 -------------------------GGCAGAUGGCUUGAA-AAUGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUAUAAUUUACUGGCAAAUUAUUUUCAUAAGCCAUUUGCAUUU -------------------------.((((((((((((((-(((((........)).......(((((.((((((((.....))))).))).))))))))))))..)))))))))).... ( -25.20, z-score = -3.47, R) >consensus _________________________AGCAGAUGGCAACA____AGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUU ..........................(((((((((.......................((((........)))).....(((((((......)))))))........))))))))).... (-15.86 = -16.08 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:08 2011