| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,959,519 – 15,959,610 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 15,959,519 – 15,959,610 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 76.11 |
| Shannon entropy | 0.44844 |
| G+C content | 0.43532 |
| Mean single sequence MFE | -16.15 |
| Consensus MFE | -6.27 |
| Energy contribution | -6.99 |
| Covariance contribution | 0.71 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 15959519 91 + 27905053 ----------GAGCCAGAAC-GAAGCAGAUGAACCAAAGAUAUACAUGGCCU--GGACAUUGAACGACAAGUAUAAAUGCUUGACCAUCAAUACCAGAUACCAG ----------..((((....-.........................))))((--((..(((((....((((((....))))))....))))).))))....... ( -15.95, z-score = -2.59, R) >droSim1.chr3R 22002103 91 - 27517382 ----------GAGCCAGAAC-GAAGCAGAUGAACCAAAGAUAUACAUGGCCU--GGACAUUGAACGACAAGUAUAAAUGCUUGACCAUCAAUACCAGAUACCAG ----------..((((....-.........................))))((--((..(((((....((((((....))))))....))))).))))....... ( -15.95, z-score = -2.59, R) >droSec1.super_27 31008 91 - 799419 ----------GAGCCAGAAC-GAAGCAGAUGAACCAAAGAUAUACAUGGCCU--GGACAUUGAACGACAAGUAUAAAUGCUUGACCAUCAAUACCAGAUAGCAG ----------..((((....-.........................))))((--((..(((((....((((((....))))))....))))).))))....... ( -15.95, z-score = -2.13, R) >droEre2.scaffold_4770 12040291 91 - 17746568 ----------GAAGCAGAAC-GAAGUAGAUGAACCAAAGAUAUACAUGGCCU--GGACAUUGAACGACAAGUAUAAAUGCUUGACCAUCAAUACCAGAUACCAG ----------..........-.........................(((.((--((..(((((....((((((....))))))....))))).))))...))). ( -14.60, z-score = -2.03, R) >droAna3.scaffold_13340 2524479 82 + 23697760 --------------------GAUUGCUAGAAGACCGAAGAUAUACAUUGCCU--GGACAUUGAACGACAAGUAUAAAUGCUUGACCAUCAAUACCAGAUACCAG --------------------..............................((--((..(((((....((((((....))))))....))))).))))....... ( -12.70, z-score = -2.11, R) >droPer1.super_6 3099209 103 - 6141320 ACAACAGAAGGAGCAGCAGCAGGAGCAGAUGA-CCAAAGAUCUACAUGGCCACAGGACAUUGAACGACAAGUAUAAAUGCUUGGCCAUCAAUACCAGAUACCAG .........((.((....)).((.(.((((..-......)))).)(((((((..((.((((..((.....))...))))))))))))).....)).....)).. ( -20.50, z-score = -1.34, R) >droMoj3.scaffold_6540 14146948 74 - 34148556 ----------------------------UACAGCAGCCGAUAUAUAUCGCCA--AGACAGUGAGCGACAAGUAUAAAUGCCGGCUCAUCAAUAGCCGAGUGCAG ----------------------------....(((((...(((((.((((((--......)).))))...)))))...))(((((.......)))))..))).. ( -17.40, z-score = -1.49, R) >consensus __________GAGCCAGAAC_GAAGCAGAUGAACCAAAGAUAUACAUGGCCU__GGACAUUGAACGACAAGUAUAAAUGCUUGACCAUCAAUACCAGAUACCAG ......................................................((..(((((....((((((....))))))....))))).))......... ( -6.27 = -6.99 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:06 2011