| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,957,955 – 15,958,024 |
| Length | 69 |
| Max. P | 0.595926 |
| Location | 15,957,955 – 15,958,024 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 88.31 |
| Shannon entropy | 0.22493 |
| G+C content | 0.49883 |
| Mean single sequence MFE | -21.28 |
| Consensus MFE | -16.72 |
| Energy contribution | -16.77 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15957955 69 - 27905053 CUCGACCAGCAGUGGAAACAUGCUUGGCAAAGGACUAAAGUCCUAGCGACUGGCUCAUUUGUUGUUGUU ...(.((((((.((....))))).))))..(((((....)))))((((((.(((......))))))))) ( -21.50, z-score = -1.57, R) >droAna3.scaffold_13340 2522969 67 - 23697760 CUCAGCCGGCGAUGGAAACAUACUUUGCCAAGGACUUUAGUCCUGGCCACUGUCUCAUCUGUUUCUG-- ....((((((((((....))....))))).(((((....))))))))....................-- ( -20.10, z-score = -2.21, R) >droSim1.chrU 1453274 69 + 15797150 CUCGACCAGCAGUGGAAACAUGCUUGGCAAAGGACUAAAGUCCUGGCCACUGGCUCAUCUGUUGUUGUU ......((((((..((.....(((((((..(((((....))))).))))..)))...))..)))))).. ( -25.10, z-score = -2.31, R) >droSec1.super_27 29455 69 + 799419 CUCGACCAGCAGUGGAAACAUGCUUGGCAAAGGACUAAAGUCCUGCCCACUGGCUCAUCUGUUGUUGUU ......((((((..((.....(((.((((..((((....))))))))....)))...))..)))))).. ( -22.70, z-score = -1.72, R) >droYak2.chr3R 4766289 69 - 28832112 CUCGACCAGCGGUGGAAACAUGCUUGGCAAAGGACUAAAGUCCUGGACACUGUCUCAUCUGUUGUUGUU ..((((.(((((..((.((((((...))).(((((....)))))......))).))..))))))))).. ( -17.20, z-score = -0.10, R) >droEre2.scaffold_4770 12038861 66 + 17746568 --CGACCAGCAGUGGAAACAUGCUUGGCAAAGGACU-AAGUCCUGGCCACUGUCUCAUCUGUUGUUGUU --((((.(((((..((.(((....((((..(((((.-..))))).)))).))).))..))))))))).. ( -21.10, z-score = -1.45, R) >consensus CUCGACCAGCAGUGGAAACAUGCUUGGCAAAGGACUAAAGUCCUGGCCACUGGCUCAUCUGUUGUUGUU ......((((((..((........((((..(((((....))))).))))........))..)))))).. (-16.72 = -16.77 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:05 2011