| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,952,007 – 15,952,123 |
| Length | 116 |
| Max. P | 0.968524 |
| Location | 15,952,007 – 15,952,123 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 86.17 |
| Shannon entropy | 0.24155 |
| G+C content | 0.44204 |
| Mean single sequence MFE | -36.60 |
| Consensus MFE | -29.10 |
| Energy contribution | -28.82 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15952007 116 - 27905053 AGCCUAGUAUACUUGGCUAAAAUUUACAUAGGUGGCCGCUGGAC-UGGCUAUAUCCAAAUAGCCAAAAUUGCAAAGGAGUAAGGAUAGGGAAAAUAUCCUUACUCUCCAUCGAACGC ((((.((....)).))))............(((((..((.....-(((((((......))))))).....))...((((((((((((.......)))))))))))))))))...... ( -40.00, z-score = -3.99, R) >droSec1.super_27 23613 116 + 799419 AGCCUAGUAUUCUUGGCUAAAAUUUACAUAGGUGGCCGGUGGAC-UGGCUAUAUCCAAAGAGCCAAAAUUGCAAAGGAGUAAGGAUAGGGAAAAUAUCCUUACUCUCCAUCGAACGC ((((.((....)).)))).............(((..(((((((.-(((((..........)))))...........(((((((((((.......))))))))))))))))))..))) ( -40.10, z-score = -3.63, R) >droEre2.scaffold_4770 12032937 116 + 17746568 AGCCUGGUAUACUUGGCUAAAAUUUACAUAGGUGGCCAGACUAUGGGGCUAU-UUCGAAGAGCCAAAGUUCCAAAGGAGUAGGGAUAGGAUAAAUUUCCUUACUCUCCGUCGGACGC (((((.(((...(((((((...((.....)).)))))))..))).)))))..-(((((.((((....))))....((((((((((...........))))))))))...)))))... ( -35.40, z-score = -1.36, R) >droYak2.chr3R 4760316 113 - 28832112 AGCCUGGUAUACUUGGCUAAAAUUUACAUAGGUGGCCAGACU----GGCUAUAUUCAAAGAGCAAGCGAUUCAAAGGAGCUGGGGUAGGGAAAAUUUCCUUGAUCUCCAUCGGACGC ((((.((....)).)))).............((((((.....----)))))).............(((.(((...((((......((((((.....))))))..))))...)))))) ( -27.50, z-score = 0.54, R) >droSim1.chr3R 21994187 116 + 27517382 AGCCUAGUAUACUUGGCUAAAAUUUACAUAGGUGGCCGGUGGAC-UGGCUAUAUCCAAAGAGCCAAAAUUGCAAAGGAGUAAGGAUGGGGAAAAUAUCCUUACUCUCCAUCGAACGC ((((.((....)).)))).............(((..(((((((.-(((((..........)))))...........(((((((((((.......))))))))))))))))))..))) ( -40.00, z-score = -3.43, R) >consensus AGCCUAGUAUACUUGGCUAAAAUUUACAUAGGUGGCCGGUGGAC_UGGCUAUAUCCAAAGAGCCAAAAUUGCAAAGGAGUAAGGAUAGGGAAAAUAUCCUUACUCUCCAUCGAACGC ((((.((....)).))))............(((((...........((((..........))))...........((((((((((((.......)))))))))))))))))...... (-29.10 = -28.82 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:04 2011