| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,933,511 – 15,933,612 |
| Length | 101 |
| Max. P | 0.831266 |
| Location | 15,933,511 – 15,933,612 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.86 |
| Shannon entropy | 0.41479 |
| G+C content | 0.34790 |
| Mean single sequence MFE | -18.93 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.97 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15933511 101 + 27905053 AAUAUAUUCUAUUUACUUAGUUUGGA----AAUUUUGAAUAGCGUGU-UCUUACAUCCGGACAAAAAAUUCCGGGUAACCGCACUCCGCUGUAUUCCAUGUUCUAA .................(((..((((----(.......(((((((((-..((((..(((((........)))))))))..))))...))))).)))))....))). ( -20.20, z-score = -1.51, R) >droSim1.chr3R 21981044 101 - 27517382 AAUACAUUCUAUUUACUUAGUUUAAA----AACUUUUAAUAGCGUGU-UCUUACAUCCGGACAAAAAAUUCCGGGUAACCGCACUCCGCUGUAUUCCAUGUUCUAA ((((((..(((((.....((((....----))))...))))).((((-..((((..(((((........)))))))))..)))).....))))))........... ( -18.70, z-score = -2.37, R) >droSec1.super_27 8338 101 - 799419 AAUACAUUCUAUUUACUAAGUUUAAA----AACUUUUAAUAGCGUGU-UCUUACAUCCGGACAAAAAAUUCCGGGUAACCGCACUCCGCUGUAUUCCAUGUUCUAA ((((((..(((((....(((((....----)))))..))))).((((-..((((..(((((........)))))))))..)))).....))))))........... ( -19.90, z-score = -2.84, R) >droYak2.chr3R 4736122 105 + 28832112 UAUACAUUCUAUAUGCUAUACUUAAAUGUAAACAAAUAAUAGCGAGU-UCUUACAUCCGGACAAAAAAUUCCGGGUAGCCGCACGCCGCUGUAUUCCAUGCUCUAA ..............(((((...................)))))((((-...((((((((((........)))))))(((.(....).))))))......))))... ( -19.81, z-score = -1.09, R) >droEre2.scaffold_4770 12019653 100 - 17746568 AGUACAUA-UAUUUACUUAAUAUGCA----AACAAUUAAUAGCGUGU-UCUUACAUCUGGACAAAAAAUUCCGGGUAGCCGAACACCGCUGUAUUCCAUGUUCUAA ((.(((((-((((.....)))))...----........(((((((((-((....(((((((........)))))))....))))).)))))).....)))).)).. ( -23.00, z-score = -2.75, R) >droAna3.scaffold_13340 2503468 101 + 23697760 AACAAAUUUUUUGU-UUUUGUAGGAA----AUUGUUUAAAAAUUCAAACCUUACAUCCGGACAAAAUAUACCAGGUAUCAAUUCGCCGCUAAAAGCCAUACUCAAA ........((((((-((.((((((..----.(((..........)))..))))))...)))))))).......(((........)))((.....)).......... ( -12.00, z-score = 0.06, R) >consensus AAUACAUUCUAUUUACUUAGUUUAAA____AACUUUUAAUAGCGUGU_UCUUACAUCCGGACAAAAAAUUCCGGGUAACCGCACUCCGCUGUAUUCCAUGUUCUAA ......................................((((((..........(((((((........)))))))..........)))))).............. (-11.22 = -11.97 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:03 2011