| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,930,765 – 15,930,857 |
| Length | 92 |
| Max. P | 0.812852 |
| Location | 15,930,765 – 15,930,857 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 71.75 |
| Shannon entropy | 0.37715 |
| G+C content | 0.29404 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -10.94 |
| Energy contribution | -11.83 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15930765 92 + 27905053 GUUGUCUUACUAGCUAUGCAUUUUAGCUAAAAUUGAGCUGAAACUUGUAUCAUGUACAAUAUCAUUUUAACGUAUAGAGUAUGAAACAGUAC------------------ (((.((.((((..((((((.((((((((.......)))))))).((((((...))))))............)))))))))).))))).....------------------ ( -19.50, z-score = -1.27, R) >droSec1.super_27 5566 90 - 799419 GUUGUCGUACUAGCUAUGCAUUUUAGCUAAAAUUUAGUUAAAACGUGU---AUACA-CGUAUCAUUCUAACGU--AUAGUAUGAAACAGUACAUAU-------------- (((.(((((((((.(((((((((((((((.....))))))))..))))---))))(-(((.........))))--.))))))))))).........-------------- ( -21.60, z-score = -2.32, R) >droSim1.chr3R 21978224 108 - 27517382 GUUCUCGUACUAGCGAUGCAGUUUAGC-AAAAUUUAGUUAAAACGUGUAUCAUGUAUCAUAUCAUUUUCAUUUC-AUAGUAUGAAACAGUAUAUACCAAUAUAUAUAUAC (((.((((((((..((((((.((((((-........))))))...))))))(((........))).........-.))))))))))).(((((((........))))))) ( -22.20, z-score = -2.94, R) >consensus GUUGUCGUACUAGCUAUGCAUUUUAGCUAAAAUUUAGUUAAAACGUGUAUCAUGUA_CAUAUCAUUUUAACGU__AUAGUAUGAAACAGUACAUA_______________ (((.((((((((((...))..((((((((.....))))))))..................................)))))))))))....................... (-10.94 = -11.83 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:02 2011