| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,924,562 – 15,924,636 |
| Length | 74 |
| Max. P | 0.974335 |
| Location | 15,924,562 – 15,924,636 |
|---|---|
| Length | 74 |
| Sequences | 4 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 62.00 |
| Shannon entropy | 0.58544 |
| G+C content | 0.45583 |
| Mean single sequence MFE | -22.18 |
| Consensus MFE | -8.14 |
| Energy contribution | -10.33 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15924562 74 - 27905053 CAGAGAACUGCAAGGGUGGUAUUUUUUGCCACUCGACUCACAC-----------ACACAAUUUUGAGUGCGGGUGCCACUCACCA ..(((....((..((((((((.....)))))))).((((.(((-----------.((......)).))).))))))..))).... ( -23.60, z-score = -2.14, R) >droAna3.scaffold_12935 99339 85 + 119555 CAGAGAACGGCACGGGUGGCACUUUUCGGCACCCUAUGCAUACUAUGUAUACUCAUAAAAAUUCGUACAUGGAUGGCACUCUCCA ..((((...((..(((((.(.......).)))))....(((.((((((((..............)))))))))))))..)))).. ( -24.54, z-score = -2.49, R) >droWil1.scaffold_180762 33055 69 - 61563 ------ACGUCAAGGGUGUCACUUUUUGGCACCCAAAUCACAC----------UUAUAAAUUUUGAGUGCUUGUCGCACUCACAA ------.......((((((((.....)))))))).........----------..........(((((((.....)))))))... ( -23.80, z-score = -4.74, R) >droMoj3.scaffold_2408 876 74 + 1284 CAGAGAGCUGCAAGUGUGCCAAUUUUUGCCACCUUACUCACAC-----------AAUAAAAUUUGUGUGCCGGUGCUAAUCAACA ((((((...(((....)))...)))))).((((.....(((((-----------((......)))))))..)))).......... ( -16.80, z-score = -0.52, R) >consensus CAGAGAACGGCAAGGGUGGCACUUUUUGCCACCCUACUCACAC___________AAAAAAAUUUGAGUGCGGGUGCCACUCACCA .............((((((((.....))))))))..............................((((((.....)))))).... ( -8.14 = -10.33 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:01 2011