| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,918,254 – 15,918,349 |
| Length | 95 |
| Max. P | 0.527927 |
| Location | 15,918,254 – 15,918,349 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 96.21 |
| Shannon entropy | 0.06604 |
| G+C content | 0.55908 |
| Mean single sequence MFE | -34.86 |
| Consensus MFE | -32.81 |
| Energy contribution | -32.85 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15918254 95 + 27905053 UAACGGCAACGCGAACCUAAAACGCCAUGGCGGCCGCCAUUGUGCAAUUGCAAAGUGGCAAAAGGGCGGAAUGGCGAAAUGGCGGCCAAGUUAGG ...((....))....(((((...((....))((((((((((.(((..((((....(....)....))))....))).))))))))))...))))) ( -35.30, z-score = -1.33, R) >droSim1.chr3R 21966129 95 - 27517382 UAACGGCAACGCGAACCUAAAACGCCAUGGCGGCCGCCAUUGUGCAAUUGCAAAGUGGCAAAAGGGCGGAAUGGCGAAAUGGCGGCCAAGUUAGG ...((....))....(((((...((....))((((((((((.(((..((((....(....)....))))....))).))))))))))...))))) ( -35.30, z-score = -1.33, R) >droSec1.super_58 171830 94 - 188520 UAACGGCAACGCGAACCUAAAACGCCAUGGCGGCCGCCAUUGUGCAAUUGCAAAGUGGCAAAAGGGCGGAAUGGCGAA-UGGCGGCCAAGUUAGG ...((....))....(((((..((((((..((.((((((((.(((....))).))))))....)).))..))))))..-(((...)))..))))) ( -35.10, z-score = -1.24, R) >droYak2.chr3R 4706726 95 + 28832112 UAACGGCAGCGCGAACGCAAAACGCCAUGGCGGCCGCCAUUGUGCAAUUGCAAAGUGGCAAAAGGGCGAAAUGGUAAAAUGGCGGCCAAGUUAGG ....(((.((((....)).....(((((..((.((((((((.(((....))).))))))....)).))..)))))......)).)))........ ( -35.40, z-score = -1.36, R) >droEre2.scaffold_4770 12004810 95 - 17746568 UAACGGCAACGCGAACCCAAAACGCCACGGCGGCCGCCAUUGUGCAAUUGCAAAGUGGCAAAAGGGCGAAAUGGCGAAAUGGCGGCCAAGUUAGG (((((((................)))..(((.(((((((((.(((....))).))))))......((......)).....))).)))..)))).. ( -33.19, z-score = -0.57, R) >consensus UAACGGCAACGCGAACCUAAAACGCCAUGGCGGCCGCCAUUGUGCAAUUGCAAAGUGGCAAAAGGGCGGAAUGGCGAAAUGGCGGCCAAGUUAGG (((((((................))).((((.(((((((((.(((....))).))))))......((......)).....))).)))).)))).. (-32.81 = -32.85 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:29:01 2011