| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,891,382 – 15,891,473 |
| Length | 91 |
| Max. P | 0.523198 |
| Location | 15,891,382 – 15,891,473 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 73.65 |
| Shannon entropy | 0.47226 |
| G+C content | 0.46501 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -10.85 |
| Energy contribution | -13.27 |
| Covariance contribution | 2.42 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15891382 91 + 27905053 -----------GAAAGUAAAGUUUUCGUUACCCUUAAUGGAGCCCGAAGUGAAGUAAGUUCGGUGGCCAAAAAAAGGGGCUGCGGUGUGCGAAGAUUUCGUA -----------((((.....((..((((..(((((..(((...(((((.(......).)))))...)))....)))))...))))...)).....))))... ( -25.40, z-score = -1.62, R) >droSim1.chr3R 21938075 89 - 27517382 -----------GAAAGUAAAGUUUUCGUUACC-UUAAUGGAGCCCGAAGUGAAGUAAGUUCGGUGGCCAAAAAA-GUGGCUGCGGUGUGCGAAGAUUUCGUA -----------....(..((((((((((((((-...........((((.(......).))))(..((((.....-.))))..))))).))))))))))..). ( -27.20, z-score = -3.00, R) >droSec1.super_58 16454 89 - 188520 -----------GAAAGUAAAGUUUUCGUUACC-UUAAUGGAGCCCGAAGUGAAGUAAGUUCGGUGGCCAAAAAA-GUGGCUGCGGUGUGCGAAGAUUUUGUA -----------.....((((((((((((((((-...........((((.(......).))))(..((((.....-.))))..))))).)))))))))))).. ( -28.80, z-score = -3.83, R) >droYak2.chr3R 4675531 89 + 28832112 -----------GAAAGUAAAGUUUUCGUUACC-UUAAUGGAGCCCGAAGUGAAGUAAGGUCGGUGGCCAAAACU-GUGGCUGCGGGGUGCAACGGCUUCGUU -----------(((((.....)))))......-..((((((((((((..(......)..)))(..((((.....-.))))..)..........))))))))) ( -24.20, z-score = 0.10, R) >droEre2.scaffold_4770 11977834 89 - 17746568 -----------GAAAGUAAAGUUUUCGUUACC-UUAAUGGAGCCCGAAGUGAAGUAAGUUCGGUGGCCAAAAAU-GUGGCAGCGGGCGGCGAAGGUUUCGCA -----------....(..(((..((((((.((-.....)).(((((((.(......).))).((.((((.....-.)))).))))))))))))..)))..). ( -29.70, z-score = -2.29, R) >droGri2.scaffold_15074 336693 93 - 7742996 UCGACCAGGCAGAGAGCAAAGUUCCUAUUAUGUUUA--CGAGCAUUAUGCGAGUUAA------UGGCUGAGUCGCGGGGGAUAAACGUACAAAUAAUGGUU- ..(((((.((.....))...((((((...(((((..--..)))))..(((((.(((.------....))).)))))))))))..............)))))- ( -20.60, z-score = -0.18, R) >consensus ___________GAAAGUAAAGUUUUCGUUACC_UUAAUGGAGCCCGAAGUGAAGUAAGUUCGGUGGCCAAAAAA_GUGGCUGCGGUGUGCGAAGAUUUCGUA ...............(..((((((((((..((............((((.(......).))))(((((((.......)))))))))...))))))))))..). (-10.85 = -13.27 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:57 2011