| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,889,927 – 15,890,028 |
| Length | 101 |
| Max. P | 0.971814 |
| Location | 15,889,927 – 15,890,028 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 91.69 |
| Shannon entropy | 0.18341 |
| G+C content | 0.36571 |
| Mean single sequence MFE | -28.62 |
| Consensus MFE | -26.37 |
| Energy contribution | -26.40 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.971814 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 15889927 101 + 27905053 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUUUUU-------------- ((....))....(((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..)))))........-------------- ( -27.60, z-score = -1.98, R) >droSim1.chr3R 21936570 101 - 27517382 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCACAUUUUUUUU-------------- ((....))((((((.(((((...-...(((.....(((((((((..(........)..)))))))))(((......))))))....))))).))))))....-------------- ( -26.70, z-score = -1.57, R) >droSec1.super_58 14925 102 - 188520 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUUUUUU------------- ((....))....(((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..))))).........------------- ( -27.60, z-score = -1.90, R) >droYak2.chr3R 4674049 98 + 28832112 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUU----------------- ((....))....(((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..))))).....----------------- ( -27.60, z-score = -2.24, R) >droEre2.scaffold_4770 11976381 98 - 17746568 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUU----------------- ((....))....(((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..))))).....----------------- ( -27.60, z-score = -2.24, R) >droAna3.scaffold_13340 2462216 101 + 23697760 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUUUUU-------------- ((....))....(((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..)))))........-------------- ( -27.60, z-score = -1.98, R) >dp4.chr2 3015068 100 - 30794189 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUCCU--------------- .(....)((((((((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..))))).))))).--------------- ( -30.60, z-score = -3.22, R) >droPer1.super_6 3036387 100 - 6141320 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUCCU--------------- .(....)((((((((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..))))).))))).--------------- ( -30.60, z-score = -3.22, R) >droWil1.scaffold_181108 3920826 101 + 4707319 CGGAAACGGAAAUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUUUCU-------------- ((....))(((((((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..)))))...)))).-------------- ( -28.70, z-score = -2.42, R) >droVir3.scaffold_13047 16188319 110 - 19223366 CGGAAACGGAAAUGCGCCAUUAAACUGGCAAGUUAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUCUGCGCUGCUCAC------ ((....))((...((((((......))))......(((((((((..(........)..)))))))))(((.((.(((((..(....)..))))).)).)))))...))..------ ( -31.20, z-score = -1.83, R) >droMoj3.scaffold_6540 14071199 114 - 34148556 -AGGAACGGAAGUGCGCCAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUGCCACUCGCACUCCUCUCGGCUG -..((..(((.(((((.......-.(((((.(((((((((((((..(........)..)))))))))((((.......)))).....)))).)))))..))))))))..))..... ( -32.40, z-score = -0.93, R) >droGri2.scaffold_15074 334885 98 - 7742996 UGGAAACGGAAAUGCGCUAUUAA-CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUCU----------------- .(....)((((((((((((....-.))))......(((((((((..(........)..))))))))))))....(((((..(....)..))))))))))----------------- ( -25.20, z-score = -1.50, R) >consensus CGGAAACGGAAAUGCGCCAUUAA_CUGGCAAGUCAAGCUUAUUAGCUGCAAUAAAAAAUAAUAAGCUGCAAAGUUAUGUUGCAAUUGUGGCAUAUUUUUUU_______________ ((....))....(((((((......))))......(((((((((..(........)..))))))))))))....(((((..(....)..)))))...................... (-26.37 = -26.40 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:56 2011