| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,886,455 – 15,886,547 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 15,886,455 – 15,886,547 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 66.31 |
| Shannon entropy | 0.67110 |
| G+C content | 0.43652 |
| Mean single sequence MFE | -21.26 |
| Consensus MFE | -6.89 |
| Energy contribution | -6.70 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 15886455 92 - 27905053 GGAGGCGUCAAACUCAUUUAACGCCUAAUUA-----CUUUGGGGCCGAGACGCAAU--------------CGUGUGAGCAACCGCACAC--AAAUUUCUAAAUCCUAAUUAGG ..((((((.(((....))).)))))).....-----..((((((...(((......--------------.(((((......)))))..--.....)))...))))))..... ( -20.64, z-score = -0.90, R) >droSim1.chr3R 21933203 92 + 27517382 GGAGGCGUCAAACUCAUUUAACGCCUAAUUA-----CUUUGGGGCCGAGACGCAAU--------------CGUGUGAGCAACCGCACAC--AAAUUUCUAUAUCCUAAUUAGG ..((((((.(((....))).)))))).....-----..((((((...(((......--------------.(((((......)))))..--.....)))...))))))..... ( -20.64, z-score = -0.91, R) >droSec1.super_58 11554 92 + 188520 GGAGGCGUCAAACUCAUUUAACGCCUAAUUA-----CUUUGGGGCCGAGACGCAAU--------------CGUGUGAGCAACCGCACAC--AAAUUUCUAUAUCCUAAUUAGG ..((((((.(((....))).)))))).....-----..((((((...(((......--------------.(((((......)))))..--.....)))...))))))..... ( -20.64, z-score = -0.91, R) >droYak2.chr3R 4670767 91 - 28832112 GGAGGCGUCAAACACAUUUAACGCCCAAUUU-----CACU-GGGCCGAGACGCAAU--------------CGUGUGAGCAACCGCACAC--AAAUUUCUAUAUCCUAAUUAGG (((.((((((((....)))...(((((....-----...)-))))...)))))...--------------.(((((......)))))..--...........)))........ ( -23.20, z-score = -2.25, R) >droEre2.scaffold_4770 11972948 92 + 17746568 GGAGGCGUCAAACACAUUUAACGCCUAAUUU-----CAUUGGGGCCGAGACGCAAU--------------CGUGUCAGCCACCGCACAC--AAAUUUCUAUAUCCUAAUUAGG ((((((((.(((....))).)))))......-----....(((((.((.(((....--------------))).)).))).))......--...........)))........ ( -23.30, z-score = -2.35, R) >droAna3.scaffold_13340 2459164 94 - 23697760 GAAGGCAUCAAAAACAUUUAACGCUUAAUUA-----CAUUGGCGGCAAAAGGCAAU--------------CGUCUAAGCUGCCACACACUCAAAUUUCGACUUCCUAAUUAGG ((((((................)).......-----...(((((((...((((...--------------.))))..)))))))................))))......... ( -17.39, z-score = -1.73, R) >dp4.chr2 3011613 92 + 30794189 CAAGGCGUUAAACGCAUUUAACGCUUAAUUA-----CAUUGGGGCCAAAAGGCAAU--------------CGUGUGGGUAGCGGUACACU--AAUUUCCACUUCCUAAUUAGG ..((((((((((....)))))))))).....-----.(((((((((....)))...--------------...(((((....((....))--....)))))..)))))).... ( -24.80, z-score = -2.10, R) >droPer1.super_6 3032926 92 + 6141320 CAAGGCGUUAAACGCAUUUAACGCUUAAUUA-----CAUUGGGGCCAAAAGGCAAU--------------CGUGUGGGUAGCGGUACACU--AAUUUCCACUUCCUAAUUAGG ..((((((((((....)))))))))).....-----.(((((((((....)))...--------------...(((((....((....))--....)))))..)))))).... ( -24.80, z-score = -2.10, R) >droWil1.scaffold_181108 3917627 86 - 4707319 CAAAGCGUCAAACACAUUUAACGCUUAAUUA-----CUUUGAUUACCCUG-GCACC--------------CGCACAG--AAACGUUCUU-----UUACCUCAAACUAAUUGAU ..((((((.(((....))).))))))(((((-----.(((((.....(((-((...--------------.)).)))--....((....-----..)).))))).)))))... ( -14.00, z-score = -2.71, R) >droMoj3.scaffold_6540 14067197 113 + 34148556 GAACGCGUCAAACGUAUUUAAUGCUUGAUUACCUAACAAUUGGCCUAGUAUGUGGUAAGAAGAGAAAGAGAAAGAGAAAGGACAUUCACUACACAUUCCACUUGCUAAUUGAA ......(((((.(((.....))).))))).......((((((((..((((((((....(((.......................)))....)))))...))).)))))))).. ( -17.70, z-score = 0.52, R) >droGri2.scaffold_15074 331289 108 + 7742996 GUAGGCGUCAAAAGCAUUUAGCGCUUAAUUGU----UACUGAGAGCAGUUAGAGGAGGGCAGGUGAAGAGUGGAUCAGAACACA-GCAUAACGGCAUCCACUUGCUAAUUGGA ...((((..(((....)))..))))(((((((----(......))))))))......((((((((....(((........))).-((......))...))))))))....... ( -26.70, z-score = -0.50, R) >consensus GAAGGCGUCAAACACAUUUAACGCUUAAUUA_____CAUUGGGGCCAAGACGCAAU______________CGUGUGAGCAACCGCACAC__AAAUUUCCACAUCCUAAUUAGG ..((((((.(((....))).)))))).............................................((((........)))).......................... ( -6.89 = -6.70 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:55 2011