| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,884,837 – 15,884,929 |
| Length | 92 |
| Max. P | 0.837579 |
| Location | 15,884,837 – 15,884,929 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 75.74 |
| Shannon entropy | 0.41131 |
| G+C content | 0.36686 |
| Mean single sequence MFE | -22.76 |
| Consensus MFE | -10.84 |
| Energy contribution | -10.84 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15884837 92 + 27905053 ACAUAAAAUCCAUUUUACAGCACAUUUGCCGCAU-----AAGUGUAGAAAGUAAAGUAAGGAUUGUAC------CACCGAUAGGUGGCGUGUAAGAAAUUGUA ((((..((((((((((((..((((((((.....)-----)))))).)...)))))))..)))))...(------((((....))))).))))........... ( -22.20, z-score = -2.24, R) >droEre2.scaffold_4770 11970337 85 - 17746568 ------------UUUUACAGUGCAUUUGUAGCAUUGAAAAGGUGUAGAAAGUAAUGUAAAGUGUGUUC------CACCGAUAGGUGGCGUGUAAGAACAUGUA ------------(((((((.(((.(((...(((((.....))))).))).))).))))))).......------((((....))))((((((....)))))). ( -20.60, z-score = -2.10, R) >droYak2.chr3R 4669046 100 + 28832112 --AAAUAAAAUCUUCUACA-UACAUUCAUAGCAUUGAAAAGGUGUAGAAAGUAAUGUGAGGUGUGUACAGUGUACACCGAUAGGUGGCGGGUAAGAAAAUGUA --..........(((((((-(...((((......))))...)))))))).((.((.((.((((((.......))))))..)).)).))............... ( -20.60, z-score = -1.16, R) >droSec1.super_58 9988 92 - 188520 ACAUAAAAUCCAUUUUACAGCACAUUUGCCGCAU-----AAGUGUAGAAUGUAAUGUAAGGUGUAAGC------CACCGAUAGGUGGCGUGUAAGCAAUUGUA ((((......(((((((((..((((((..(((..-----..)))..))))))..)))))))))...((------((((....))))))))))........... ( -31.60, z-score = -4.16, R) >droSim1.chr3R 21931637 92 - 27517382 ACAUAAAAUCCAUUUUACAAAACAUUUGCCGCAU-----AAGUGUAGAAAGUAAUGUAAUGUGUAAAC------CACCGAUAGGUGGCGUGUAAGAAAAUGUA ((((......(((.(((((..((.(((..(((..-----..)))..))).))..))))).)))....(------((((....))))).))))........... ( -18.80, z-score = -1.45, R) >consensus ACAUAAAAUCCAUUUUACAGCACAUUUGCCGCAU_____AAGUGUAGAAAGUAAUGUAAGGUGUGUAC______CACCGAUAGGUGGCGUGUAAGAAAAUGUA ............(((((((..((.(((...((((.......)))).))).))..))))))).............((((....))))................. (-10.84 = -10.84 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:54 2011