| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,866,885 – 15,866,944 |
| Length | 59 |
| Max. P | 0.852795 |
| Location | 15,866,885 – 15,866,944 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 79.13 |
| Shannon entropy | 0.35269 |
| G+C content | 0.35336 |
| Mean single sequence MFE | -12.32 |
| Consensus MFE | -6.26 |
| Energy contribution | -7.18 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15866885 59 - 27905053 AAAUCAGCCAUAAAUC---UCAUUUUAUCUUCUGGAGUUUUGCACAAUAUUUUGUGCAUCCA---- ...((((..(((((..---....)))))...)))).....(((((((....)))))))....---- ( -11.80, z-score = -2.77, R) >droSim1.chr3R 21913361 59 + 27517382 AAAUCAGCCAUAAAUC---UCAUUUUAUCUGCUGGAGUUUUGCACAAUAUUUUGUGCAUCCA---- ...(((((.(((((..---....)))))..))))).....(((((((....)))))))....---- ( -15.20, z-score = -3.31, R) >droSec1.super_58 107260 59 + 188520 AAAUCAGCCAUAAAUC---UCAUUUUAUCUGCUGGAGUUUUGCACAAUAUUUUGUGCAUCCA---- ...(((((.(((((..---....)))))..))))).....(((((((....)))))))....---- ( -15.20, z-score = -3.31, R) >droYak2.chr3R 4640205 59 - 28832112 ACAUCACCCAUAAAUC---UCAUUUUAUCCUCUGGAGUUUCGCACAAUAUUUUGUGCAUCCA---- ................---..............(((.....((((((....)))))).))).---- ( -10.00, z-score = -3.18, R) >droAna3.scaffold_13340 2442270 66 - 23697760 AAACUUGCCAUAAAUCGUGCCGUUUUAUGAGCUAGCAUUUUCAACAAAACUUGCAGCACCUGGAUA .......(((....(((((......)))))(((.(((..((......))..))))))...)))... ( -9.40, z-score = 0.48, R) >consensus AAAUCAGCCAUAAAUC___UCAUUUUAUCUGCUGGAGUUUUGCACAAUAUUUUGUGCAUCCA____ ................................((((....(((((((....))))))))))).... ( -6.26 = -7.18 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:52 2011