| Sequence ID | dm3.chr2L |
|---|---|
| Location | 769,795 – 769,866 |
| Length | 71 |
| Max. P | 0.851376 |
| Location | 769,795 – 769,866 |
|---|---|
| Length | 71 |
| Sequences | 4 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 92.02 |
| Shannon entropy | 0.12835 |
| G+C content | 0.28873 |
| Mean single sequence MFE | -10.55 |
| Consensus MFE | -10.36 |
| Energy contribution | -9.93 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.851376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 769795 71 - 23011544 UAUCUCGCAAUAAUAAAUGUAAAUAUCUUUAAUUACUCUAACUACGUUAAACAUUUGGUAUGCUAGAGAAU ..(((((((....(((((((..............................)))))))...)))..)))).. ( -8.21, z-score = -0.89, R) >droSim1.chr2L 771976 71 - 22036055 UAUUUCGCAAUGAUAAAUGUAAAUGUCUUUAAUUACUCUAACCACGUUAAACAUUUGGUAUGCAAGAGAAU ..(((((((....(((((((.(((((..(((.......)))..)))))..)))))))...)))..)))).. ( -9.10, z-score = -0.43, R) >droSec1.super_14 741671 71 - 2068291 UAUCUCGCAAUAAUAAAUGUAAAUGUCUUUAAUUACUCUAACCACGUUAAACAUUUGGUAUGCAAGAGAAU ..(((((((....(((((((.(((((..(((.......)))..)))))..)))))))...)))..)))).. ( -11.70, z-score = -2.10, R) >droEre2.scaffold_4929 824408 71 - 26641161 UAUCUCGCAAUAAUAAAUGCAAAUGUCUUUAAUCACUUUAGCCACGUUAAGCAUUCGGUAUGCUAGAGAAU ..(((((((........))).(((((..((((.....))))..))))).(((((.....))))).)))).. ( -13.20, z-score = -1.54, R) >consensus UAUCUCGCAAUAAUAAAUGUAAAUGUCUUUAAUUACUCUAACCACGUUAAACAUUUGGUAUGCAAGAGAAU ..(((((((.((.(((((((.(((((..(((.......)))..)))))..))))))).)))))..)))).. (-10.36 = -9.93 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:47 2011