| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,778,727 – 15,778,820 |
| Length | 93 |
| Max. P | 0.813963 |
| Location | 15,778,727 – 15,778,820 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.84 |
| Shannon entropy | 0.33446 |
| G+C content | 0.48199 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -18.64 |
| Energy contribution | -18.45 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15778727 93 - 27905053 GCCAUCUUCCCUUAUUGUUGUCAGCCCGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGCAUAUGUGUUGCAUAUACUUGA---GAAUACUACUG- ....((((.......(((((..((((((((((.....))))))))))..)))))....((((.......)))).......))---)).........- ( -26.80, z-score = -2.31, R) >droSim1.chr3R 21821744 92 + 27517382 GCCAUC-UCCCUUAUUGUUGUCAGCCUGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGCAUAUGUGCUGCAUAUACUUGA---GAGUACCACUG- ....((-((.............((((((((((.....))))))))))..((((((((......)))))))).........))---)).........- ( -27.00, z-score = -1.39, R) >droSec1.super_58 20057 92 + 188520 GCCAUC-UCCCUUAUUGUUGUCAGCCUGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGCAUAUGUGCUGCAUAUACUUGA---GAGUACCACUG- ....((-((.............((((((((((.....))))))))))..((((((((......)))))))).........))---)).........- ( -27.00, z-score = -1.39, R) >droYak2.chr3R 4553741 92 - 28832112 GCCAUC-UCCCUUAUUGUUGUCAGCCUAGGCAAUAAUUGUUGGAGCUCUCAGCACGUCUGCAUAUGUGCUGCAUAUACUUGA---GAAUACCACUG- .....(-(((...(((((((((......)))))))))....))))(((.((((((((......)))))))).........))---)..........- ( -23.40, z-score = -0.92, R) >droEre2.scaffold_4770 11864279 81 + 17746568 GCCAAC-ACCCUUAUUGUUGUCAGCCUGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCU-----------GCAUAUACUUGA---GGAUGCCACUG- ......-........(((((..((((((((((.....))))))))))..)))))(((((-----------.((......)).---)))))......- ( -24.90, z-score = -1.74, R) >droAna3.scaffold_13340 2358987 88 - 23697760 GCCGUC-UUCCUUAUUGUUGUCGGCCUCGGCAAUAAUUGUUCAGGCCCACAGCGUGU--------GAGUUUUGUAUUCUUGAACUGAAGUUCCCUGG .((...-...(((((((((((.(((((..(((.....)))..))))).)))))).))--------)))............((((....))))...)) ( -24.50, z-score = -2.06, R) >consensus GCCAUC_UCCCUUAUUGUUGUCAGCCUGGGCAAUAAUUGUUCGGGCUCUCAGCACGUCUGCAUAUGUGCUGCAUAUACUUGA___GAAUACCACUG_ ...............(((((..((((((((((.....))))))))))..)))))........................................... (-18.64 = -18.45 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:47 2011