| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,778,240 – 15,778,335 |
| Length | 95 |
| Max. P | 0.509135 |
| Location | 15,778,240 – 15,778,335 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 88.65 |
| Shannon entropy | 0.18779 |
| G+C content | 0.46854 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -22.98 |
| Energy contribution | -23.62 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15778240 95 - 27905053 AAUAUCCGUAAGGACCAUCUUUCCGUGCCACGUCGCACACCCAUACACA----------CGUGUAUGGGAAUUGUCCAGCAUUUUGCGGCUAUUUAUAGUUGGAA ....(((....((((.........((((......)))).((((((((..----------..))))))))....)))).((.....))(((((....)))))))). ( -30.20, z-score = -2.85, R) >droSim1.chr3R 21821262 95 + 27517382 AAUAUCCGUAAGGACCAUCUUUCCGUGCCACGUUGCACACCCAUACACA----------CGUGUAUGUGAAUUGUCCAGCAUUUUGCGGCUAUUUAUAGUUGGAA ....(((....((((.........((((......)))).(.((((((..----------..)))))).)....)))).((.....))(((((....)))))))). ( -23.00, z-score = -0.83, R) >droSec1.super_58 19575 95 + 188520 AAUAUCCGUAAGGACCAUCUUUCCGUGCCACGUUGCACACCCAUACACA----------CGUGUAUGGGAAUUGUCCAGCAUUUUGCGGCUAUUUAUAGUUGGAA ....(((....((((.........((((......)))).((((((((..----------..))))))))....)))).((.....))(((((....)))))))). ( -30.10, z-score = -2.69, R) >droYak2.chr3R 4553290 96 - 28832112 AAUAUCCGUAAGGACCAUCUUUCCGUGCCCCGUCGCACACACAUACACAUG--------GGUAUAU-GGAAUUGUCCAGCAUUCUGCGGCUAUUUAUGGGGGGAA ....(((....)))...(((..(((((....((((((.....((((.....--------.)))).(-(((....))))......))))))....)))))..))). ( -28.90, z-score = -0.75, R) >droEre2.scaffold_4770 11863820 105 + 17746568 AAUAUCCGUGAGGACCAUCUUUCCGUGCCCCGUCGCACUCACAUGCACACGUAUAGUGCCGUAUAUGGGAAUUGUCCAGCAUUUUGCGGCUAUUUAUGGGUGGAA ....(((....)))(((((.....((((......))))...........((((....((((((.((((((....)))..)))..))))))....))))))))).. ( -31.80, z-score = -0.69, R) >consensus AAUAUCCGUAAGGACCAUCUUUCCGUGCCACGUCGCACACCCAUACACA__________CGUGUAUGGGAAUUGUCCAGCAUUUUGCGGCUAUUUAUAGUUGGAA ....(((....((((.....((((((((......))))...(((((((............)))))))))))..))))(((........)))..........))). (-22.98 = -23.62 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:46 2011