| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,762,759 – 15,762,822 |
| Length | 63 |
| Max. P | 0.694657 |
| Location | 15,762,759 – 15,762,822 |
|---|---|
| Length | 63 |
| Sequences | 8 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 64.60 |
| Shannon entropy | 0.71034 |
| G+C content | 0.49291 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -4.85 |
| Energy contribution | -5.07 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694657 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 15762759 63 + 27905053 AGAAAAGGGAUCCAGGAAACCGGACCCAUGACAUUGGAUCUGGUUUUUGCAGACCAGAUAAAC ......(((.(((.(....).))))))..........((((((((......)))))))).... ( -22.30, z-score = -3.79, R) >droSim1.chr3R 21805834 62 - 27517382 -AGUAAAGGAUCCAGGAAACCGGACCCACAACUUUGGAUCUGGUUUCUGUCGACCAGAUAAAC -......((.((..((((((((((.(((......))).))))))))))...))))........ ( -20.90, z-score = -2.59, R) >droSec1.super_25 812747 62 - 827797 -AGGAAAGGAUCCAGGAAACCGGACCCACGACUUUGGAUCUGGUUUCUGACGACCAGAUAAAC -......((.((..((((((((((.(((......))).))))))))))...))))........ ( -20.90, z-score = -2.57, R) >droYak2.chr3R 4537264 62 + 28832112 -AGGAAAGGAUCCAGGAAACCGGACCCACGACUUUGGAUCGGGUUUUUCCCGACCAGAUAAAC -......((.(((.(....).))).)).....(((((.(((((.....))))))))))..... ( -22.40, z-score = -2.19, R) >droEre2.scaffold_4770 11848353 61 - 17746568 -AGGAGGGGCUCCAGGAAACCGGAGCCACGACUUUCGAUCGGGUUUU-CCCGACCAGAUAAAC -.(((((((((((.(....).))))))....)))))(.(((((....-))))).)........ ( -25.90, z-score = -2.91, R) >droAna3.scaffold_13340 2343717 61 + 23697760 -GCAAAAGGAGCCGCAUAACCGGACUCACGGUCCACCAUCUGGUUUA-GCUGACCCGUCAAAC -......((..(.((..(((((((.....((....)).)))))))..-)).)..))....... ( -13.40, z-score = -0.19, R) >dp4.chr2 2862515 53 - 30794189 ---------GCAGAAAGAACCGGACUUAUGUUCUGAUGUUCAGGUUU-CAUGACCAGAAAAAC ---------.......((((.((((....))))....)))).((((.-...))))........ ( -9.40, z-score = -0.28, R) >droPer1.super_6 2881782 53 - 6141320 ---------GCAGAAAGAACCGGACUGAUGUUCUGCUGUUCAGGUUU-CAUGACCAGAAAAAC ---------((((((...............))))))..(((.((((.-...)))).))).... ( -10.16, z-score = -0.12, R) >consensus _AGGAAAGGAUCCAGGAAACCGGACCCACGACUUUGGAUCUGGUUUU_CCCGACCAGAUAAAC ...............(((((((((..............)))))))))................ ( -4.85 = -5.07 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:45 2011