| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,747,208 – 15,747,304 |
| Length | 96 |
| Max. P | 0.880338 |
| Location | 15,747,208 – 15,747,304 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.01 |
| Shannon entropy | 0.44447 |
| G+C content | 0.41908 |
| Mean single sequence MFE | -27.71 |
| Consensus MFE | -18.57 |
| Energy contribution | -18.52 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.880338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15747208 96 + 27905053 GUCUGCAAUCGAAUUCUGAGAAAACCGCGAG---------------------CCGGAAGAGAUCUUUUAGUUUAGAUCCAGAGAAGCGUGAAAUUGACGGAAUUUGAAAAAUACAAC ........((((((((((.......((((..---------------------.(....).(((((........)))))........)))).......)))))))))).......... ( -19.84, z-score = -0.68, R) >droEre2.scaffold_4770 11833220 106 - 17746568 GCUUGCGAUCAAAUUCUGAGGAAUCCGCUGC----GCUGAGCUGCGCAAAAGACGGAGGAUAUCUUUUAGUGUAGA--CGUUAAAGCGUAAUAAAUGCAGAAUUUGAAAAAU----- ........((((((((((.((...))..(((----(((..(((((((((((((.........)))))).)))))).--).....)))))).......)))))))))).....----- ( -29.60, z-score = -1.60, R) >droSec1.super_25 797197 117 - 827797 GUCUGCAAUCGAAUUCUGAGGAAACCGCGACUUUGGCUAAGCUGCGCAAUAUCCGGAAGAGAUCUUUUAGUUUAGAUCCGGAGAAGCGUAAAAAUGGCAGAAUUUGAACAAUGGAAC .(((....((((((((((.(....)(((..((((((((((((((...((.((((....).))).)).))))))))..))))))..))).........)))))))))).....))).. ( -33.70, z-score = -2.05, R) >consensus GUCUGCAAUCGAAUUCUGAGGAAACCGCGAC____GCU_AGCUGCGCAA_A_CCGGAAGAGAUCUUUUAGUUUAGAUCCGGAGAAGCGUAAAAAUGGCAGAAUUUGAAAAAU__AAC ........((((((((((.......(((.......((......))......((((((..((((......))))...))))))...))).........)))))))))).......... (-18.57 = -18.52 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:43 2011