| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,696,667 – 15,696,746 |
| Length | 79 |
| Max. P | 0.923286 |
| Location | 15,696,667 – 15,696,746 |
|---|---|
| Length | 79 |
| Sequences | 9 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 72.30 |
| Shannon entropy | 0.59286 |
| G+C content | 0.50245 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -10.29 |
| Energy contribution | -10.46 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15696667 79 - 27905053 AGUAACACCCACUUCUCUCACAGAUUGGUAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCA ((((((..(((..(((.....))).))).(((.(((((..(....)...))))).)))))))))............... ( -22.70, z-score = -2.00, R) >droSim1.chr3R 21739322 79 + 27517382 AGUAACAUCCACUUAUCCCACAGAUUGGUAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCA (((((((((.(((....((((.....((.....))(((......))))))).))))))))))))............... ( -23.70, z-score = -2.32, R) >droSec1.super_25 746946 79 + 827797 AGUAACAUCCACUUAUCCCACAGAUUGGUAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCA (((((((((.(((....((((.....((.....))(((......))))))).))))))))))))............... ( -23.70, z-score = -2.32, R) >droEre2.scaffold_4770 11780171 79 + 17746568 AGUAACACCCACUUCCUUCACAGAUUGGCAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUCAUACCCCUGCA ...................((((...((((((.(((((..(....)...))))).)))))).))))............. ( -22.90, z-score = -1.70, R) >droYak2.chr3R 4467479 79 - 28832112 UGUAACAUCCACUUCCUUCGCAGAUUGGCAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCA .((((((((.(((.((..(((.((..(((......)))....)).))).)).)))))))))))................ ( -25.30, z-score = -2.53, R) >droAna3.scaffold_13340 2278662 78 - 23697760 -AUUAAUCCUUCGACUCCCACAGAUUGGCAUAUCCGCCUUCUUUGGCGUGGCCGUCAUGUUGCUGUUCAUACCUCUGCA -...........(((..((((.(((......))).(((......)))))))..)))....(((.............))) ( -16.02, z-score = -0.48, R) >droWil1.scaffold_181089 4088599 67 - 12369635 ------------AUUAAUUCUAGAUUGGCGUUUCAUCGCUCUUCGGCGUGGCAGUGAUGCUGCUGUUUUUACCCUUUCA ------------..........((..((((......))))..))...(..(((....)))..)................ ( -15.30, z-score = -0.92, R) >droMoj3.scaffold_6540 8899156 60 + 34148556 -------------------ACAGAUUGGCGUUUCAGCAUUCUUCGGCGUGGCUAUUAUGUUGCUCUUCAUACCCCUCCA -------------------..(((..(((((...(((((.(....).)).)))...)))))..)))............. ( -8.90, z-score = 0.80, R) >droGri2.scaffold_14830 4034557 60 + 6267026 -------------------ACAGAUCGGAUUUUCGGCUUUGUUUGGCGUCGCUGUGAUGCUACUCUUUCUACCACUGCA -------------------(((((((((....)))).))))).(((((((.....)))))))................. ( -10.90, z-score = 0.31, R) >consensus _GUAACA_CCACUUCUCUCACAGAUUGGCAUCUCCGCCUUCUUCGGCGUGGCGGUGAUGUUGCUGUUUAUACCCCUGCA ...................((((...((((((.((((.............)))).)))))).))))............. (-10.29 = -10.46 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:39 2011