| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,684,269 – 15,684,362 |
| Length | 93 |
| Max. P | 0.633568 |
| Location | 15,684,269 – 15,684,362 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 93.38 |
| Shannon entropy | 0.11403 |
| G+C content | 0.44313 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -21.16 |
| Energy contribution | -20.84 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15684269 93 - 27905053 AGAAUUUAACGCUGUUGCCUCGCGCGAAUUGUUGGCGAUAACAGAAAGAAAUUGCCAACACGACUGGCGUAAACACUUUGGAUUUGAUCAGCC .((((((((.(.(((((((...((.....((((((((((...........))))))))))))...)))...))))).))))))))........ ( -22.40, z-score = -0.71, R) >droEre2.scaffold_4770 11767537 89 + 17746568 AGAAUUCAACGCUGUUGCCUCAAGCGAAUUGUUGGCGAUAAC----AGAAAUUGCCAACUCGACUGGCGUAAACACUUUGGAUUUGAACAGCC .((((((((.(.((((((.(((..(((...(((((((((...----....))))))))))))..))).)).))))).))))))))........ ( -25.10, z-score = -2.15, R) >droYak2.chr3R 4454877 89 - 28832112 AGAAUUCAACGCUGUUGCCUUAAGCAAAUUGUUGGCGAUAAC----AGAAAUUGCCAACACGACUGGCGUAAACGCUUUGGAUUUGAUCAGCC .((((((((((...((((.....))))..((((((((((...----....))))))))))))...((((....))))))))))))........ ( -24.40, z-score = -1.76, R) >droSec1.super_25 734641 89 + 827797 AGAAUUUAACGCUGUUGCCUCGAGCGAAUUGUUGGCGAUAAC----AGAAAUUGUCAACACGACUGGCGUAAACAUUUUGGAUUUGAUCAGCC .((((((((...((((..(.(.((((...((((((((((...----....)))))))))))).)).).)..))))..))))))))........ ( -19.20, z-score = -0.09, R) >droSim1.chr3R 21726763 89 + 27517382 AGAAUUUAACGCUGUUGCCUCGAGCGAAUUGUUGGCGAUAAC----AGAAAUUGCCAACACGACUGGCGUAAACACUUUGGAUUUGAUCAGCC .((((((((.(.((((..(.(.((((...((((((((((...----....)))))))))))).)).).)..))))).))))))))........ ( -22.90, z-score = -1.46, R) >consensus AGAAUUUAACGCUGUUGCCUCGAGCGAAUUGUUGGCGAUAAC____AGAAAUUGCCAACACGACUGGCGUAAACACUUUGGAUUUGAUCAGCC .((((((((.(.(((((((.....((...((((((((((...........))))))))))))...)))...))))).))))))))........ (-21.16 = -20.84 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:39 2011