| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,674,035 – 15,674,135 |
| Length | 100 |
| Max. P | 0.639005 |
| Location | 15,674,035 – 15,674,135 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 56.52 |
| Shannon entropy | 0.58926 |
| G+C content | 0.31349 |
| Mean single sequence MFE | -18.67 |
| Consensus MFE | -8.32 |
| Energy contribution | -8.67 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15674035 100 - 27905053 GAUGUACUUAAGGAAUUUGGCUAAGGACACAAAGGCUAUUUUUACGUUGGAACUUGAUUACUAUGUUCAU--CUCCUUGAAUAUGGAAAAAUAUCAAUCAAA (((((..(((((...((..((((((((...........)))))).))..)).)))))...(((((((((.--.....)))))))))....)))))....... ( -19.10, z-score = -1.32, R) >dp4.chr2 30197964 92 - 30794189 -------CAAGCAAAUUAAGAUUUGGGUGGGUAAUUUGAUAUUCCUUUAGGAAGGAAGCAAUCAAGUCAUUGUUGGACAAAUCUAUUGAAAUAUUCAUU--- -------.............((((.(((((((...(((((.((((((....))))))...)))))(((.......)))..))))))).)))).......--- ( -18.20, z-score = -1.09, R) >droPer1.super_6 5585589 95 - 6141320 -------CAAGCAAAUUAAGAUUUGGGUGGGUAAUUUGAUAUUCCUUUAGGAAGGAAGCAAUCAAGUCAUUGUUGGACAAAUCUAUUGAAAUAUUCAAUAUU -------...........(((((((....(((.(((((((.((((((....))))))...))))))).)))......)))))))(((((.....)))))... ( -18.70, z-score = -1.23, R) >consensus _______CAAGCAAAUUAAGAUUUGGGUGGGUAAUUUGAUAUUCCUUUAGGAAGGAAGCAAUCAAGUCAUUGUUGGACAAAUCUAUUGAAAUAUUCAUUA__ ..................(((((((........(((((((.((((((....))))))...)))))))..........))))))).................. ( -8.32 = -8.67 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:37 2011