| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,673,207 – 15,673,313 |
| Length | 106 |
| Max. P | 0.665443 |
| Location | 15,673,207 – 15,673,313 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 58.27 |
| Shannon entropy | 0.86011 |
| G+C content | 0.52037 |
| Mean single sequence MFE | -31.34 |
| Consensus MFE | -12.37 |
| Energy contribution | -12.09 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.81 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15673207 106 + 27905053 ---UCACAAAUGGGCAGAAUU---CCGGGA---CACAAAACUCGACGUCUGCUUACUAUUGUAGGCGGUAGUGCUGUUUCUUUAGCCGCCCUGGCGGCUUUCAUCAAACUACGUU ---..((((.((((((((...---.((((.---.......))))...))))))))...)))).....(((((..((.......((((((....)))))).....)).)))))... ( -32.80, z-score = -1.92, R) >droSim1.chr3R 21715837 106 - 27517382 ---UCACAGAUGGGCGGAAUU---CCGGGA---CACAAAACUCGACGAUUGCUGACUUUUGUGGGCGGUAGUGCUGUUUCUUUGGCCGCCCUGGCGGCUUUCAUUAAACUACGGU ---...((((..(((((.(((---(((...---(((((((.(((........))).)))))))..))).))).)))))..))))(((((....))))).........((....)) ( -33.40, z-score = -0.74, R) >droSec1.super_25 723618 106 - 827797 ---UCACAGAUGGGCGGAAUU---CCGGGA---CACAAAACUCGACGAUUGCUGACUUUUGUGGGCGGUAGUGCUGUUUCUAUGGCCGCCCUGGCGGCUUUCAUUAAACUACGGU ---(((((((.((.(((((((---.((((.---.......))))..)))).))).)))))))))((.(((((...........((((((....))))))........))))).)) ( -31.71, z-score = -0.28, R) >droYak2.chr3R 4443498 106 + 28832112 ---UCACAAACAGGCGGAAUU---CCGGGA---CACGAAUCGCGACGUCUGCUGACUUUUGUGGGCGGUAGUGCCAUUUCCUUGGCCGCCCUGGCGGCUUUCAUUAAACUACGGU ---(((((((..((((((..(---((((..---......))).))..))))))....)))))))((.(((((...........((((((....))))))........))))).)) ( -36.21, z-score = -0.90, R) >droEre2.scaffold_4770 11756422 106 - 17746568 ---UCGCAAACUGGCGGAAUU---CCGGGA---CACAAAUCGCGACGUCUGCUGACUUUUGUGGGCGGUAGUGCCGUUUCCUUGGCCGCCCUGGCUACUUUUAUUAAAUUACGGU ---..((.....(((((....---((((((---.((....(((..((((..(........)..))))...)))..)).))).))))))))...)).................... ( -28.70, z-score = 0.86, R) >droAna3.scaffold_13340 2255872 112 + 23697760 GGUCAAUCUACUGGCGGAUUU---GCCAAAAACCACAAAUCGCGACGCCUAUGGCAAAUCGCAGGCGGUGGCGCUGUAUCUUUGGCCGCCCUGGCGGCUUUCAUCAAACUUCGUU (((((..((((((.(.(((((---(..........))))))((((.(((...)))...)))).).))))))...)).)))...((((((....))))))................ ( -33.20, z-score = 0.20, R) >dp4.chr2 30196759 103 + 30794189 ---GUGAACACAAGUGGAUUU---AGCAAA------CGAACGCAUCGCUUGCUGUCGCUGCUGGGCGGCAGUGCAAUUUCCGUGGCGGCAGUAAUUGCAUUCAUAAAGCUCCGUG ---.....(((.((..(...(---(((((.------(((.....))).))))))...)..))((((.(.(((((((((.(((...)))....)))))))))).....)).))))) ( -30.10, z-score = 0.85, R) >droPer1.super_6 5584369 103 + 6141320 ---GUGAACACAAGUGGAUUU---AGCAAA------CGAACGCAUCGCUUGCUGUCGCUGCUGGGCGGCAGUGCAAUUUCCGUGGCGGCAGUAAUUGCAUUCAUAAAGCUCCGUG ---.....(((.((..(...(---(((((.------(((.....))).))))))...)..))((((.(.(((((((((.(((...)))....)))))))))).....)).))))) ( -30.10, z-score = 0.85, R) >droWil1.scaffold_181108 567492 100 - 4707319 ---------ACAGGUGGUUUUCACACAAGAAACUUAAAUGGUCAGCGCUAUUGUUUUUUAAUUGGCGGUAGUGCUGCUGCUCUA------UUGGCGGCAUUUAUCAAAUUUCGAA ---------....(((.......)))..((((..((((((..(((((((((((((........)))))))))))))(((((...------..))))))))))).....))))... ( -28.30, z-score = -2.29, R) >droMoj3.scaffold_6540 8875446 91 - 34148556 ----------------CAACC---AAGGAAU-----AACACACGACGUCUACUUGUACUAGUGGGCGGCAGUUUCGUCUCAUUAGCGGCACUGACUGCACUUAUUCGCCUGCGAA ----------------.....---...((((-----((.......((((((((......))))))))((((((..(((.(....).)))...))))))..))))))......... ( -25.20, z-score = -1.10, R) >droVir3.scaffold_12855 7374536 88 + 10161210 ----------------CCACC---AAGGAA--------CACACAUCGUCUGCUGGUUCUGGUGGGCGGCAGUGUCGCCUCAUUGGCGGCAUUGACUGCGUUUAUUCGACUGAGAA ----------------(((((---(..(((--------(.((((.....)).))))))))))))((((((((((((((.....)))))))))).))))................. ( -37.20, z-score = -3.04, R) >droGri2.scaffold_15074 2257231 88 - 7742996 ----------------CCACC---UAGGAA--------CAACCGUCGACUGCUGGCGCUGGUGGGCGGCAGUGUUGUUUCCUUUGCGGCAUUGGCUGCAUUUAUUCGAUUGCGAA ----------------(((((---..((..--------...))((((.....))))...)))))(((((((((((((.......)))))))).))))).....((((....)))) ( -29.20, z-score = -0.23, R) >consensus ___UCACA_ACAGGCGGAAUU___ACGGAA___CACAAAACGCGACGUCUGCUGACUCUUGUGGGCGGUAGUGCUGUUUCCUUGGCCGCCCUGGCGGCUUUCAUUAAACUACGAU .............................................(((((((........)))))))(((((............((((......)))).........)))))... (-12.37 = -12.09 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:36 2011