| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,654,134 – 15,654,195 |
| Length | 61 |
| Max. P | 0.870902 |
| Location | 15,654,134 – 15,654,195 |
|---|---|
| Length | 61 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 83.88 |
| Shannon entropy | 0.27126 |
| G+C content | 0.68033 |
| Mean single sequence MFE | -26.48 |
| Consensus MFE | -24.20 |
| Energy contribution | -24.08 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15654134 61 - 27905053 CGCUUAGACUGGAGGGCCCUGGCGCUGCUGGGCGCCCUCCUCUCGUUCAUCAUCGCCUGGC ......((..(((((((((..((...))..)).)))))))..))................. ( -25.90, z-score = -1.08, R) >droSec1.super_25 704859 61 + 827797 CGCUUGGACUGGAGGGCCCUGGCGCUGCUGGGCGCCCUCCUCUCGUUCAUAAUCGCCUGGC .((.(((((.(((((((((..((...))..)).)))))))....))))).....))..... ( -27.50, z-score = -1.67, R) >droAna3.scaffold_13340 2235991 61 - 23697760 CGCCUGGACUGGAGGGCCCUGGCGCUGCUGGGCGCCCUCCUCGCGUAUAUUAUCCCCUGGC .(((.((...(((((((((..((...))..)).)))))))....(........).)).))) ( -27.40, z-score = -1.10, R) >droMoj3.scaffold_6540 8850689 61 + 34148556 CGCUUGAAUUGGAGGGCCCUGGCGCUGCUGGGCGCCCUCCUUUUAUCGAUUGAGACCCGGG ((..((((..(((((((((..((...))..)).))))))).)))).))............. ( -25.10, z-score = -1.49, R) >consensus CGCUUGGACUGGAGGGCCCUGGCGCUGCUGGGCGCCCUCCUCUCGUUCAUUAUCGCCUGGC ......((..(((((((((..((...))..)).)))))))..))................. (-24.20 = -24.08 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:34 2011