| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,652,957 – 15,653,052 |
| Length | 95 |
| Max. P | 0.592115 |
| Location | 15,652,957 – 15,653,052 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.86 |
| Shannon entropy | 0.26693 |
| G+C content | 0.39690 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -17.50 |
| Energy contribution | -18.32 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15652957 95 + 27905053 GUUUAUUUGGUUGUUCAUGCAGUCCAAGUGGAAUGGGUGGUUCGAAGUUCGAAACAAAAAAACCAAACAAAGAACCCCCAAAGAAAUUGAACAUA .(((((((((((((....)))).))))))))).((((.(((((...(((.(............).)))...)))))))))............... ( -24.20, z-score = -1.94, R) >droSim1.chr3R 21694606 95 - 27517382 GUUUAUUUGGUUGUUCAUGCAGUCCAAGUGGAAUGGGUGGUUCGAACUUCGAAACAAAAAACCAAACAAAGGAACCCCCAAAGAAAUUGAACAUA .(((((((((((((....)))).))))))))).((((.((((((.....))).........((.......)).)))))))............... ( -22.60, z-score = -0.86, R) >droYak2.chr3R 4426562 85 + 28832112 GUUUAUUUGGUUGUUCAUGCAGUCCAAGUGGAAUGGGUGGUUCGAA----------AAAAACCAAACCAAAGAACCACCGAAGGAGUAGAACAUA .(((((((((((((....)))).)))))))))...((((((((...----------...............))))))))................ ( -23.87, z-score = -2.26, R) >droEre2.scaffold_4770 11736684 81 - 17746568 GUUUAUUUGGCUCUUCAUGCAGUCCAA-UGGAAUGGGUGGUUCGAA----------AAAAACCAAACAAA---ACCCCCGAAGAAACUGAACAUU (((((...(..(((((......(((..-.)))..(((.((((....----------.............)---)))))))))))..))))))... ( -16.43, z-score = -0.32, R) >consensus GUUUAUUUGGUUGUUCAUGCAGUCCAAGUGGAAUGGGUGGUUCGAA__________AAAAACCAAACAAAAGAACCCCCAAAGAAAUUGAACAUA .(((((((((((((....)))).))))))))).((((.(((((............................)))))))))............... (-17.50 = -18.32 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:33 2011