| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,526,206 – 15,526,307 |
| Length | 101 |
| Max. P | 0.736760 |
| Location | 15,526,206 – 15,526,307 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.84 |
| Shannon entropy | 0.29713 |
| G+C content | 0.47545 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -15.85 |
| Energy contribution | -16.97 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15526206 101 + 27905053 CGGACACGGACAUGAGCGCUUCGUUCGCGUUUUGCUCUUAACAGCAAAUUCUCGCAUAUUUUUCUCA------ACCGGUUCUCUUGCACUCUCAUUC--UAUA--UACCCA---- .((((.(((....(((((...)))))(((.((((((......))))))....)))............------.)))))))................--....--......---- ( -21.90, z-score = -2.50, R) >droSim1.chr3R 21573020 101 - 27517382 CGGACACGGACAUGAGCGCUUCGUUCGCGUUUUGCUCUUAACAGCAAAUUCUCGCAUAUUUUUCUCA------ACCGGUUCUCUUGCACUCUCACUC--UAUA--UACCCA---- .((((.(((....(((((...)))))(((.((((((......))))))....)))............------.)))))))................--....--......---- ( -21.90, z-score = -2.54, R) >droSec1.super_25 582829 101 - 827797 CGGACACGGACAUGUGCGCUUCGUUCGCGUUUUGCUCUUAACAGCAAAUUCUCGCAUAUUUUUCUCA------ACCGGUUCUCUUGCACUCUCACUC--UAUA--UACCCA---- .((((.(((....(.(((...))).)(((.((((((......))))))....)))............------.)))))))................--....--......---- ( -17.80, z-score = -1.10, R) >droYak2.chr3R 4300755 105 + 28832112 CGGGCACGGACAUGAGCGCUUCGUUCGCGUUUUGCUCUUAACAGCAUAUUCUCGCAUAUUUUUCUCA------ACCGGUUCUCUUGUGCUCUCACUC--UACA--UAUAUACCCA .((((((((((..(((((...)))))(((...((((......))))......)))............------....))))....))))))......--....--.......... ( -22.10, z-score = -1.70, R) >droEre2.scaffold_4770 11628161 101 - 17746568 ----CACGGACAUGAGCGCUUCGUCCGCGUUUUGCUCUUAACAGCGAGUUCUCGCAUAUUUUCCUCG------ACCGCUGCUCCUGCACUCUCACCCACUUUCCAUACCCA---- ----...(((...(((((...((....))...)))))......((((....))))...........(------(..(.(((....))))..))........))).......---- ( -19.00, z-score = -0.85, R) >droAna3.scaffold_13340 2110813 112 + 23697760 GGGACACG-AGAUGAGCGCCUAGGUCGCGUUUUGCUCUUAACAGCAAAUUCUCGCAUAUUUUUCUCCUAUUUUACCGGUUCUCUUGCACUCUCACUC--UACGAGUAACCAACAA ((((..((-(((.((((((....)).(((.((((((......))))))....)))......................)))))))))...))))((((--...))))......... ( -23.30, z-score = -0.93, R) >consensus CGGACACGGACAUGAGCGCUUCGUUCGCGUUUUGCUCUUAACAGCAAAUUCUCGCAUAUUUUUCUCA______ACCGGUUCUCUUGCACUCUCACUC__UAUA__UACCCA____ .((((.(((....((((.....))))(((.((((((......))))))....)))...................))))))).................................. (-15.85 = -16.97 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:20 2011