| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,513,476 – 15,513,576 |
| Length | 100 |
| Max. P | 0.749025 |
| Location | 15,513,476 – 15,513,576 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.40 |
| Shannon entropy | 0.37453 |
| G+C content | 0.38388 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -15.32 |
| Energy contribution | -17.45 |
| Covariance contribution | 2.13 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15513476 100 + 27905053 AUGUGUCUAGUUAAAAUACGCUCUGUCA----CUUCGAUUUUUAUUUCGACUUUGGAAAAGCCAAUUUAUAAGUUCGUAUGAUAGAGCGGAUUGGCUGACGUCG ..(((((.((((((....((((((((((----...(((..(((((.......((((.....))))...))))).)))..))))))))))..)))))))))).). ( -29.60, z-score = -3.15, R) >droYak2.chr3R 4288054 92 + 28832112 GUUUGCAUGGUGUUAAAACGCUUUGCCAAACACUGCGAUUUUUAUUUCA------------UCAAUUAACAAAUUUGAAUAACAGAGCGAAUUUUCUGAUGCCG (((((((.(((((....))))).)).)))))...(((............------------((((.........))))....(((((......))))).))).. ( -16.60, z-score = -0.47, R) >droSec1.super_25 570256 104 - 827797 AUGUGUCUGGUUAAAAAACGCUCUGUCAGGCACUUCGAUUUUUAUUUCGGCUUUGGAAAAACCAAUUUACAAGUUCGUAUGGUAGAGCGAAUUGGCUGACGUCG ..(((((.((((((....((((((..((.((...((((........))))..((((.....))))...........)).))..))))))..)))))))))).). ( -26.30, z-score = -1.17, R) >droSim1.chr3R 21560412 104 - 27517382 AUGUGUCUGGUUAAAAAACGCUCUGUCAGGCACUUCGAUUUUUAUUUCGACUUUGGAAAACCCAAUUUACAAGUUCGUAUGAUAGAGCGAAUUGGCUUACGUCG (((((...((((((....((((((((((.((...((((........))))..((((.....))))...........)).))))))))))..))))))))))).. ( -27.60, z-score = -2.23, R) >consensus AUGUGUCUGGUUAAAAAACGCUCUGUCAGGCACUUCGAUUUUUAUUUCGACUUUGGAAAA_CCAAUUUACAAGUUCGUAUGAUAGAGCGAAUUGGCUGACGUCG ....(((.((((((....((((((((((......((((........))))..((((.....))))..............))))))))))..))))))))).... (-15.32 = -17.45 + 2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:20 2011