| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,511,362 – 15,511,428 |
| Length | 66 |
| Max. P | 0.720330 |
| Location | 15,511,362 – 15,511,428 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.15470 |
| G+C content | 0.44315 |
| Mean single sequence MFE | -15.18 |
| Consensus MFE | -14.06 |
| Energy contribution | -13.86 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15511362 66 + 27905053 GCGGGAAGCGAUUGCAAAUGCCGAGUUACCUUGUUAACUUAGAUGAAAAGUUGACACUCGAGCGUG ((((.......))))..(((((((((......((((((((.......))))))))))))).)))). ( -17.60, z-score = -1.66, R) >droSim1.chr3R 21558272 63 - 27517382 ---GGAAGCUUUUGCAAAUGCCGAGUUACCUUGUUAACUUAGAUGAAAAGUUGACACUCGAGCGUG ---....((....))..(((((((((......((((((((.......))))))))))))).)))). ( -17.30, z-score = -2.46, R) >droSec1.super_25 568136 63 - 827797 ---GGAAGCUUUUGCAAAUGCCGAGUUACCUUGUUAACUUAGAUGAAAAAUUGACACUCGAGCGUG ---....((....))..(((((((((......(((((.((.......)).)))))))))).)))). ( -11.30, z-score = -0.55, R) >droYak2.chr3R 4286098 63 + 28832112 ---GGAAGUGGUUGCAAAUGCUGAGUUACCUUGUUAACUUAGAUGAAAAGUUGACACUCGAGCGUG ---..............(((((((((......((((((((.......)))))))))))).))))). ( -14.10, z-score = -0.96, R) >droEre2.scaffold_4770 11614281 63 - 17746568 ---GGCAGUGGCUGGAAAUGCUGAGUUACCUUGUUAGCUUAGAUGAAAAGUUGACACUCGAGCGUG ---(((....)))....(((((((((......((((((((.......)))))))))))).))))). ( -15.60, z-score = -0.58, R) >consensus ___GGAAGCGGUUGCAAAUGCCGAGUUACCUUGUUAACUUAGAUGAAAAGUUGACACUCGAGCGUG .................(((((((((......((((((((.......))))))))))))).)))). (-14.06 = -13.86 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:18 2011