| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,044,716 – 8,044,830 |
| Length | 114 |
| Max. P | 0.925276 |
| Location | 8,044,716 – 8,044,830 |
|---|---|
| Length | 114 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 69.61 |
| Shannon entropy | 0.57151 |
| G+C content | 0.41799 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -13.99 |
| Energy contribution | -13.54 |
| Covariance contribution | -0.45 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.925276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8044716 114 + 23011544 ACGAGGACGCACUUUACGUCUUCGGCGGAUAUGAUCUAAAUAACGUGAUAAGCACGCUUCAGGUAAGUCGUAUACACUAUUCUAUUGUAUUCACGAUACAAAAGAACGUACUAA .((((((((.......))))))))(((.((((((..((.....((((.....)))).......))..))))))......((((.(((((((...))))))).)))))))..... ( -29.30, z-score = -2.15, R) >droSim1.chr2L 7824693 97 + 22036055 ACGAAGACGCACUUUACGUCUUCGGCGGAUACGAUCUGAAUAACGUGAUAAGCACGCUUCAGGUAAGUUUUAUACACUAUUCUAUUGUAUUCACGAU----------------- .((((((((.......))))))))(.(((((((((..(((((..((((((((...((((.....))))))))).)))))))).))))))))).)...----------------- ( -27.90, z-score = -3.27, R) >droSec1.super_3 3541435 97 + 7220098 ACGAAGACGCACUUUACGUCUUCGGCGGAUACGAUCUGAAUAACGUGAUAAGCACGCUUCAGGUAAGUCGUAUACACUAUUCUAUUGUAUUCACGAU----------------- .((((((((.......))))))))(.((((((((((((((...((((.....)))).))))))).(((.(....)))).......))))))).)...----------------- ( -28.00, z-score = -2.46, R) >droYak2.chr2L 10674703 103 + 22324452 ACGAGGAUGCUCUUUACGUCUUCGGCGGAUACGAUCUGAAUAACGUGAUAAGCACGCUUCAGGUAAGUCUUAUACACCAUUUUAUUGUGUUUACUUUCACGAU----------- .((((((((.......))))))))..((((...(((((((...((((.....)))).)))))))..)))).............((((((........))))))----------- ( -26.00, z-score = -1.74, R) >droEre2.scaffold_4929 16950152 103 + 26641161 ACGAGGACGCUCUUUACGUCUUCGGCGGAUACGAUCUGAAUAACGUUAUAAGCACGCUUCAGGUAAGUCUUAUACACUAUUCUACUGUAUUUACAAUCCCGAU----------- .((((((((.......))))))))(..((((((....(((((..((.(((((.((...........)))))))))..)))))...))))))..).........----------- ( -23.70, z-score = -1.34, R) >droAna3.scaffold_12916 11767606 94 - 16180835 ACGAGGAUGCUCUCUAUGUUUUCGGAGGAUACGAUCUGAACAACGUGAUCAACACACUGCAGGUAAGAUUCGGUCUCUACACUUUUAUAU-CACU------------------- .(((((((.........)))))))((((...((((((..((...(((.......))).....)).))).))).)))).............-....------------------- ( -14.30, z-score = 1.50, R) >droMoj3.scaffold_6500 21183023 86 + 32352404 ACGAGGAUGCACUCUAUGUGUUUGGGGGCUACGAUCUGAACAAUGUCAUUAGCACGUUGCAGGUACAU--UAAGAAUAGAAUUGGUCC-------------------------- ....((((((.(((((......)))))))....(((((..(((((((....).)))))))))))....--..............))))-------------------------- ( -17.20, z-score = 0.69, R) >droVir3.scaffold_12963 16241738 88 + 20206255 AAGAAGAUGCGCUCUAUGUCUUUGGUGGCUACGAUCUGAACAAUGUGAUUAGCACGUUGCAGGUGAGGCAUAAUGAUGGGAUAUAUAC-------------------------- ..............((((((((..(((.((...(((((..(((((((.....)))))))))))).)).)))......))))))))...-------------------------- ( -20.90, z-score = -0.54, R) >consensus ACGAGGACGCACUUUACGUCUUCGGCGGAUACGAUCUGAAUAACGUGAUAAGCACGCUUCAGGUAAGUCUUAUACACUAUUCUAUUGUAUUCACGAU_________________ .((((((((.......))))))))...(((...(((((.....((((.....))))...)))))..)))............................................. (-13.99 = -13.54 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:56 2011