| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,509,317 – 15,509,408 |
| Length | 91 |
| Max. P | 0.741819 |
| Location | 15,509,317 – 15,509,408 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 72.26 |
| Shannon entropy | 0.54099 |
| G+C content | 0.45485 |
| Mean single sequence MFE | -25.55 |
| Consensus MFE | -11.78 |
| Energy contribution | -11.54 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15509317 91 - 27905053 ----------------UCGGGAAAGUGGCAGAG-UGGGCG--AAAGUCUUGCAUAAUUUGCC-UGCAAAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUGU-- ----------------.((((((.(((((...(-..((((--((............))))))-..).....(((....)))........)))....)))))))).......-- ( -23.90, z-score = -0.55, R) >droSim1.chr3R 21556268 91 + 27517382 ----------------UCGGGAAAGUGGCGGAG-UGGGCG--AAAGUCUUGCAUAAUUUGCC-UGCGAAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUGU-- ----------------.((((((.(((((((.(-..((((--((............))))))-..).....(((....)))......)))))....)))))))).......-- ( -29.20, z-score = -1.94, R) >droSec1.super_25 566121 91 + 827797 ----------------UCGGGAAAGUGGCGGAG-UGGGCG--AAAGUCUUGCAUAAUUUGCC-AGCGAAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUGU-- ----------------.((((((.(((((((.(-..(((.--...).))..).(((((((((-((((...)))))....)))))))))))))....)))))))).......-- ( -33.30, z-score = -3.23, R) >droYak2.chr3R 4284112 91 - 28832112 ----------------UCGGGAAAGUGGCGGAG-UGGGCG--AAAGUCUUGCAUAAUUUGCC-UGCAAAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUGU-- ----------------.((((((.(((((((.(-..((((--((............))))))-..).....(((....)))......)))))....)))))))).......-- ( -29.20, z-score = -2.09, R) >droEre2.scaffold_4770 11612369 91 + 17746568 ----------------CCGGGAAAGCGGCGGAG-UGGGCG--AAAGUCUUGCAUAAUUUGCC-UGCCAAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUGU-- ----------------.((((((..((((((.(-..((((--((............))))))-..).....(((....)))......)))))...)..)))))).......-- ( -28.30, z-score = -1.15, R) >droAna3.scaffold_13340 2094002 91 - 23697760 ----------------ACGGAGAAGCGAGAAAG-CGGG-G--AAAGUCUUGCAUAAUUUGCC-AGCAGAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUUGG- ----------------.........(.((((.(-((((-(--..((((((((.(((((((((-(((.....))))....))))))))..))..)))))))))))).)))).)- ( -25.10, z-score = -1.11, R) >dp4.chr2 30020031 73 - 30794189 ------------------------------------GGGG--AGAGUCUUGCAUAAUUUGCCGAGUGAAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUGU-- ------------------------------------.(((--(.(((((((((.....)))((.((((...(((....)))...))))))...))))))))))........-- ( -18.40, z-score = -1.37, R) >droPer1.super_6 5400629 73 - 6141320 ------------------------------------GGGG--AGAGUCUUGCAUAAUUUGCCGAGUGAAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUGU-- ------------------------------------.(((--(.(((((((((.....)))((.((((...(((....)))...))))))...))))))))))........-- ( -18.40, z-score = -1.37, R) >droWil1.scaffold_181108 402682 85 + 4707319 -----------------------AUCGACAAAGACGAAUG--AAAGUCUUGCAUAAUUUGCC-AGUAGAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUUUUUCC-- -----------------------......(((((((...(--.(((((((((.(((((((((-(((.....))))....))))))))..))..))))))).))))))))..-- ( -17.00, z-score = -1.60, R) >droMoj3.scaffold_6540 8685152 113 + 34148556 GCGGUGAAAACUGAAAGCUGAAGGCUGAUGGGCUGAAGCCUGAAAGUCUUGCAUAAUUUGCCAGUUGGGGCACUGAAAAGUAAAUUACCGCCUAAGAGUUCCUGCUCAGCUGG (((((((...((...(((((((((((..(((((....)))))..))))))(((.....)))))))).))..(((....)))...)))))))....((((....))))...... ( -36.00, z-score = -1.42, R) >droGri2.scaffold_15074 2074933 100 + 7742996 -----------GCGGGGCAAGAUCCGUGUGAAGAUGAAGG-CAAAAUCUUGCAUAAUUUGCCAGUUGGGGCACUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUUUUUUAG- -----------((((.(((((((...(((..........)-))..))))))).(((((((((......)))(((....)))))))))))))..(((((.....)))))....- ( -25.50, z-score = -0.44, R) >droVir3.scaffold_12855 7152411 77 - 10161210 ---------------------------------CUGAGGG-CGAAGUCUUGCAUAAUUUGCCAGUUGGGGCACUGAAAAGUAAAUUACCGUCUAAGACUUCCGGUUUUUAG-- ---------------------------------(((((((-(((((((((((.(((((((((......)))(((....)))))))))..))..))))))))..))))))))-- ( -22.30, z-score = -1.84, R) >consensus _________________CGGGAAAGUGGCGGAG_UGGGCG__AAAGUCUUGCAUAAUUUGCC_AGCGAAGCGCUGAAAAGUAAAUUACCGCCUAAGACUUCCUGUAUUUGU__ ...........................................(((((((((.((((((((........))(((....)))))))))..))..)))))))............. (-11.78 = -11.54 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:17 2011