| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,508,063 – 15,508,157 |
| Length | 94 |
| Max. P | 0.971866 |
| Location | 15,508,063 – 15,508,157 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.83 |
| Shannon entropy | 0.40974 |
| G+C content | 0.50110 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -14.39 |
| Energy contribution | -14.86 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.971866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15508063 94 - 27905053 GCACCUUCUUCUCUUUCUCUCUCACCUGAACCGCGCUUAAAUACAAAAUGAUAAAUUGCCAUUUUGACUGCGGUCCCUGGUGCGGCCUCCGAUC------ (((((..............((......))((((((.(((((.....(((.....))).....))))).))))))....)))))...........------ ( -19.40, z-score = -2.24, R) >droSim1.chr3R 21555073 94 + 27517382 GCAGCACCUUCUCUCUCUCUCUCACCUGAACCGCGCUUAAAUACAAAAUGAUAAAUUGCCAUUUUGACUGCGGUCCCUGGUGCGGCCUCCGAUC------ ((.(((((...........((......))((((((.(((((.....(((.....))).....))))).))))))....))))).))........------ ( -21.50, z-score = -2.20, R) >droSec1.super_25 564908 92 + 827797 GCAGCACCU--CCUCUCUCUCUCACCUGAACCGCGCUUAAAUACAAAAUGAUAAAUUGCCAUUUUGACUGCGGUCCCUGGUGCGGCCUCCGAUC------ ((.(((((.--........((......))((((((.(((((.....(((.....))).....))))).))))))....))))).))........------ ( -21.50, z-score = -2.19, R) >droYak2.chr3R 4282818 87 - 28832112 -------GCAUUCUCGCUCUCUCACCUGAACCGCGCUUAAAUACAAAAUGAUAAAUUGCCAUUUUGACUGCGGUCCCUGGUGCGGCCUCCAAUC------ -------........(((....((((.(.((((((.(((((.....(((.....))).....))))).)))))).)..)))).)))........------ ( -18.60, z-score = -1.48, R) >droEre2.scaffold_4770 11611255 85 + 17746568 ---------GCACCCGCUCUCUCACCUGAACCGCGCUUAAAUACAAAAUGAUAAAUUGCCAUUUUGACUGCGGUCCCUGGUGCGGCCUCCAAUC------ ---------(((((.....((......))((((((.(((((.....(((.....))).....))))).))))))....)))))...........------ ( -19.00, z-score = -1.63, R) >droAna3.scaffold_13340 2092854 89 - 23697760 -----------GACCCCCUUCUCACCUGCACCGCGCUUAAAUACAAAAUGAUAAAUUGCCAUUUUGACUGCGGUCCCUGGUGCGGCCUCCAAAGUACCGC -----------............(((.(.((((((.(((((.....(((.....))).....))))).)))))).)..)))((((...........)))) ( -18.00, z-score = -0.71, R) >droWil1.scaffold_181108 401458 74 + 4707319 --------------------CUUACCUUGCCGCCGCUUAAAUACAGAAUGAUAAAUUGCCAUUUUGACUGCGGUCUCUGGUAUACCCCUCCAUU------ --------------------..((((.....(((((.......(((((((.........)))))))...)))))....))))............------ ( -15.20, z-score = -2.34, R) >consensus ___________UCUCUCUCUCUCACCUGAACCGCGCUUAAAUACAAAAUGAUAAAUUGCCAUUUUGACUGCGGUCCCUGGUGCGGCCUCCAAUC______ ...................((.((((...((((((.(((((.....(((.....))).....))))).))))))....)))).))............... (-14.39 = -14.86 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:16 2011