| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,458,093 – 15,458,189 |
| Length | 96 |
| Max. P | 0.649760 |
| Location | 15,458,093 – 15,458,189 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 83.00 |
| Shannon entropy | 0.30793 |
| G+C content | 0.60618 |
| Mean single sequence MFE | -35.90 |
| Consensus MFE | -24.50 |
| Energy contribution | -25.58 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.649760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15458093 96 - 27905053 GCCCCAAGGCGUUGGAGCCUUUGGCGGCGUUGCCCUGGGAUAUCAACUCGUAAGCAGUUGUCCUCCCACGAGUGCCCACAAACGUUGUCCUGGCAA ((((((((((......))).)))).))).(((((..((((...((((((....).)))))...))))(((..((....))..)))......))))) ( -36.00, z-score = -1.49, R) >droSim1.chr3R 21504100 96 + 27517382 GCCCCAAGGCGUUGGAGCCUUUGGCGGCGUUGCCCUGGGAUAUCCACUCGUAAGCAGUUGUCCUCCCACGGGUGCCCACAAACGUUGUCCUGGCAA ((((((((((......))).)))).)))...(((((((((...(.((((....).))).)...))))).))))(((.(((.....)))...))).. ( -37.30, z-score = -1.00, R) >droSec1.super_25 507973 96 + 827797 GCCCCAAGGCGUUUGAGCCUUUGGCGGCGUUGCCCUGGGAUAUCCACUCGUAAGCAGUUGUCCUCCCACGGGUGCCCACAAACGUUGUCCUGGCAA (((....((((((((.(((...)))(((...(((((((((...(.((((....).))).)...))))).)))))))..)))))))).....))).. ( -38.30, z-score = -1.89, R) >droYak2.chr3R 4229116 95 - 28832112 GCCCCAAGGCGUUGAAGCCUUUGGCGCCGUUGCCCUGGGAUAUCUACGCGUAAGCAGUGGUCCUCCU-CGAGUUCCCACAACCGUUGUCCUGGCAA ((((.(((((......))))).)).))..(((((..((((((.(...((....)).((((..(((..-.)))...))))....).))))))))))) ( -34.60, z-score = -1.88, R) >droEre2.scaffold_4770 11562904 76 + 17746568 GCCCCAAGGCGUUGAAGCCCUUGGCGGCGUUGCCCUGGGAUAUCUGCUCGUAAGCAGUGGUCCGUU-----GUCCUGGCAA--------------- (((((((((.((....)))))))).))).(((((..((((((.(..(((....).))..).....)-----))))))))))--------------- ( -33.30, z-score = -2.24, R) >consensus GCCCCAAGGCGUUGGAGCCUUUGGCGGCGUUGCCCUGGGAUAUCCACUCGUAAGCAGUUGUCCUCCCACGAGUGCCCACAAACGUUGUCCUGGCAA ((((((((((......))).)))).)))..((((..((((...((((((....).)))))...))))....((....))............)))). (-24.50 = -25.58 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:11 2011