| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,457,355 – 15,457,473 |
| Length | 118 |
| Max. P | 0.617690 |
| Location | 15,457,355 – 15,457,473 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 70.87 |
| Shannon entropy | 0.53795 |
| G+C content | 0.44920 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -11.93 |
| Energy contribution | -13.35 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15457355 118 - 27905053 AUCAGUGCAAAGAACGCAGCGAAACUUUGCUCC-UUUUACGGCAAAAGGUUCCUUGAACUUCAACAGAAACGCGAAUCGCAUGAAGUAGGGGAACUUUCGCCACGGGAUGGCAAAAAAA .....(((......((..(((((..((((((..-......)))))).((((((((..((((((...((........))...)))))).)))))))))))))..)).....)))...... ( -31.90, z-score = -1.06, R) >droAna3.scaffold_13340 8753670 109 + 23697760 AUCAAGUCAAAGUACACAUCCAAAGUUUGAUUCCUUUCACGGCAAUAAGUUCCUUGAACUUGUUCCAAAUGUAAAAGAACA-----AAAGCGAAAUUCCCCCG-GAGAUGGCGAA---- .....((((...............((((..(((.(((((.((.(((((((((...)))))))))))...)).))).)))..-----.))))....((((...)-))).))))...---- ( -17.80, z-score = 0.23, R) >droEre2.scaffold_4770 11561949 113 + 17746568 AUCAGUGCAAGAA-GACCACGAAAGUUGUCUCCUUUUUACGGCAAAAGGUUCCUUGAACCGCAGCGGAAGGGACAAUUGCUUG-GGGAAGGGAACUUUGGCCAUGAGAUGGCAAA---- .......((((..-(((.((....)).)))(((((((..((((((...(((((((...(((...))))))))))..)))).))-..)))))))..))))(((((...)))))...---- ( -36.70, z-score = -1.47, R) >droYak2.chr3R 4228304 115 - 28832112 AUCAGUGCAAAAAGGACAACGAAAGUUGCCUCCUUUUUACGGCAAAAGGUUCCUUGAACUUUAACAGAAAUGAGAAUUGCAUGAGGGAGGGGACCUUUCGCCACGAAAUGGCAAA---- .....(((((((((((((((....))))..))))))))..(((.(((((((((((...(((((.((....)).(.....).))))).))))))))))).)))........)))..---- ( -39.80, z-score = -3.81, R) >droSec1.super_25 507239 102 + 827797 AUCAGUACAAGGAACUCAAUGAAACUUUGCUCC-UUUCACGGCGAAAGGUUCCUUGAACUUCAACAGAAACGCGAAUCGCAUGAAGGAGGGGAACUUUCGCAA---------------- ....((..(((((...(((.......))).)))-))..)).(((((((.((((((...(((((...((........))...)))))..)))))))))))))..---------------- ( -28.40, z-score = -1.86, R) >droSim1.chr3R 21503366 102 + 27517382 AUCAGUGCAAGGAACACAACGAAACUUUGCUCC-UUUCACGGCGAAAGGUUCCUUGAACUUCAACAGAAACGCGAAUCGCAUGAAGGAGGGGAACUUUCGCAA---------------- ....(((.(((((.((...........)).)))-)).))).(((((((.((((((...(((((...((........))...)))))..)))))))))))))..---------------- ( -32.00, z-score = -2.77, R) >consensus AUCAGUGCAAAGAACACAACGAAACUUUGCUCC_UUUCACGGCAAAAGGUUCCUUGAACUUCAACAGAAACGAGAAUCGCAUGAAGGAGGGGAACUUUCGCCA_GAGAUGGCAAA____ ........................................(((...(((((((((...(((((...((........))...)))))..)))))))))..)))................. (-11.93 = -13.35 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:11 2011