| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,456,737 – 15,456,833 |
| Length | 96 |
| Max. P | 0.970304 |
| Location | 15,456,737 – 15,456,833 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 67.30 |
| Shannon entropy | 0.53798 |
| G+C content | 0.40915 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -13.36 |
| Energy contribution | -12.30 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.59 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15456737 96 - 27905053 GAGGAGGAACAGGAUAUCGUCCUGUUAAAUCAAUGAAGUGUGCGAGAAAUAACGCAUACGCCAUGUGUAAAAGGUCAGGGAUUUUC--CGAGGACUUA--------- ...((..((((((((...))))))))...)).(((..(((((((........)))))))..))).......(((((.(((....))--)...))))).--------- ( -28.60, z-score = -2.70, R) >droSim1.chr3R 21502735 105 + 27517382 GUGGAGGAACAGGAUAUCGUCCUGUUAAAUCAAUGAAGUGUGCGAGAAAUAACGCAUACGCCAUGUGUAAAAGGUCAGGGAUUUUC--CGAGAAUUUUACACUCAUA ...((..((((((((...))))))))...)).((((.(((((((........))))))).....((((((((..((..((.....)--)..)).)))))))))))). ( -33.60, z-score = -3.70, R) >droYak2.chr3R 4227699 101 - 28832112 GAAAGGGAACAGGAUACCGGCCUGUUGAAUCAAUGAAGUGUGCGAAAAACAACGAAUGU----CAUGUAAAAGGUCAGGGAUUUUC--CGAGGAUUCAACAUUCAUA (((.(((....((...))..)))((((((((.((((.((...((........)).)).)----)))............((.....)--)...)))))))).)))... ( -18.50, z-score = 0.88, R) >droAna3.scaffold_13340 8753074 99 + 23697760 --------GGGAAAUCCUUUCUUGUUAAAUCAAUGAAGUGUGUGCAAAAUUGUGCAUACGUCAUGAGACACGGGUCAGGUAUUUUUCACAGAGGUUUGAAAUCAAUA --------(..(((((((..(((((....(((.(((.(((((..((....))..))))).))))))...)))))..))).))))..).................... ( -27.80, z-score = -2.62, R) >consensus GAGGAGGAACAGGAUACCGUCCUGUUAAAUCAAUGAAGUGUGCGAAAAAUAACGCAUACGCCAUGUGUAAAAGGUCAGGGAUUUUC__CGAGGAUUUAACAUUCAUA .......(((((((.....)))))))...........(((((((........)))))))...................((((((((...)))))))).......... (-13.36 = -12.30 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:10 2011