| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,454,140 – 15,454,250 |
| Length | 110 |
| Max. P | 0.919652 |
| Location | 15,454,140 – 15,454,250 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.30 |
| Shannon entropy | 0.32982 |
| G+C content | 0.32169 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -14.40 |
| Energy contribution | -15.84 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15454140 110 + 27905053 AAUGCGUUUCUAUACGAUGCGUAACAGCGCAAUAACCUGAUAACAGGUAAGUACAAAGGAAAUUAAAAAAUAGUAAUAAAAUCGGAAUGGAAAUCAAAAGUUUUCCGCUA ...((((((((.(((..(((((....)))))...(((((....)))))..)))....)))))).........................(((((........))))))).. ( -22.00, z-score = -1.91, R) >droSim1.chr3R 21500165 109 - 27517382 AAUGCGUUUCUAUCCAAUGCGUAACAGCGCAAUAACCUGAUAACAGGUAAGUACAAAAGAAAUAAAAAAAA-GUAAUAAAAUCGGAAUGGAAAUCAAAAGUUUUCCGCUU ...((((((((......(((((....)))))...(((((....))))).........))))))........-................(((((........))))))).. ( -22.40, z-score = -2.97, R) >droSec1.super_25 504799 108 - 827797 AAUGCGUUUCUAUCCAAUGCGUAACAGCGCAAUAACCUGAUAACAGGUAAGCACAAAAGACAUAAAAAAA--GUAAUAAAAUCGGAAUGGAAAUCAAAAGUUUUCCGCUU ...((.......(((..(((((....)))))...(((((....)))))......................--...........)))..(((((........))))))).. ( -22.00, z-score = -2.44, R) >droYak2.chr3R 4225173 108 + 28832112 GGUGGGUUUCAAUCUGAUGCGUAAUAUAGCAAAAACAUGAUAACAGGUAAAUACAAAAGAAAUUUAAAAA--AAAACCGAAUUUGAAGGGAAACAAAAUGUUUUCCGCUA (((.(((((..(((((.(((........)))......(....)))))).......(((....))).....--.))))).........(((((((.....)))))))))). ( -16.40, z-score = -0.50, R) >droEre2.scaffold_4770 11558954 109 - 17746568 AGUGCGUUUCCAUGCGAUGCGUA-CAUCGCAAUAACCUGAUAACAGGUGAAUACAAAAGAAACUUUUUAAAAAUAACAAAAUCGGAAUGGAAAUUAAAAGUUAAAAGAUA .....((((((((((((((....-))))))....(((((....)))))......................................))))))))................ ( -22.20, z-score = -2.49, R) >consensus AAUGCGUUUCUAUCCGAUGCGUAACAGCGCAAUAACCUGAUAACAGGUAAGUACAAAAGAAAUUAAAAAA__GUAAUAAAAUCGGAAUGGAAAUCAAAAGUUUUCCGCUA .....((((((((((((((((......)))....(((((....)))))................................))))).))))))))................ (-14.40 = -15.84 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:09 2011