| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,451,134 – 15,451,235 |
| Length | 101 |
| Max. P | 0.598716 |
| Location | 15,451,134 – 15,451,235 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.20 |
| Shannon entropy | 0.42537 |
| G+C content | 0.46550 |
| Mean single sequence MFE | -29.99 |
| Consensus MFE | -16.11 |
| Energy contribution | -17.67 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15451134 101 + 27905053 -------UACGAAAUAUAUGCUGGCUGGGUGCCGGUACCAGCAUAAAUGUUAGGAAUAUUCCAUCGACAAGUGGGGGCAGCUCUGGGCCGGAGACAAAACAAAUUGAU -------..(((....((((((((((((...))))..)))))))).......(((....))).))).(((...(.(((........)))(....)....)...))).. ( -26.30, z-score = -0.30, R) >droEre2.scaffold_4770 11556014 99 - 17746568 -------UUCGAGAUAUAUGCUGGCUGGGUGGCG-CACCAGCAUAAAUGUUGGGAAUAUUCCAUCGACAAGUGGGGGCAGCUCUGG-CCGGAGACAAAACAAAUUGAU -------.((((........(((((..(((.((.-(.((((((....)))))).......((((......))))).)).)).)..)-))))............)))). ( -29.25, z-score = -0.94, R) >droYak2.chr3R 4222053 107 + 28832112 UUGUAUUUCCGAGAUAUAUGCUGGUGGGGUGCCG-UACCAGCAUAAAUGUUGGGAAUAUUCCAUCGACAAGUGGGGGCAGCUCUGGGUCGGAGACAAAACAAAUUGAU ..((((((((((.((.((((((((((.(....).-)))))))))).)).))))))))))....(((((...(((((....))))).)))))................. ( -38.00, z-score = -3.12, R) >droSec1.super_25 501829 101 - 827797 -------UACGAGAUAUAUGCUGGCUGGGUGCCGGUACCAGCAUAAGUGUUGGGAAUAUUCCAUCGACAAGUGGAGGCAGCUCUGUGCCGGAGUCAAAACAAAUUGAU -------.............(((((.(((((((....((((((....))))))......(((((......))))))))).)))...))))).(((((......))))) ( -31.70, z-score = -1.41, R) >droSim1.chr3R 21496576 100 - 27517382 -------UACGAGAUAUAUGCUGGCUGGGUGCCGGUACCAGCAUAAAUGUUGGGAAUAUUCCAUCGACAAGUGGGGGCAGCUCUGCGCCGGAG-CAAAACAAAUUGAU -------..(((.((.((((((((((((...))))..)))))))).)).)))......((((((......))))))...((((((...)))))-)............. ( -29.80, z-score = -0.61, R) >droVir3.scaffold_13047 3092257 81 - 19223366 ----------------UUUGAUUAUGUUGUGCCAGCAUAUACAUGUAUGUUGGGAAUAUUCCAUGGAGCCAUGAAA-----------CCGUGACGUAAACAAAUUGAU ----------------((((.((((((..(((((((((((....)))))))))........((((....))))...-----------.))..)))))).))))..... ( -24.90, z-score = -3.09, R) >consensus _______UACGAGAUAUAUGCUGGCUGGGUGCCGGUACCAGCAUAAAUGUUGGGAAUAUUCCAUCGACAAGUGGGGGCAGCUCUGGGCCGGAGACAAAACAAAUUGAU ....................(((((.(((((((....((((((....))))))......(((((......))))))))).)))...)))))................. (-16.11 = -17.67 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:07 2011