| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,448,443 – 15,448,540 |
| Length | 97 |
| Max. P | 0.749463 |
| Location | 15,448,443 – 15,448,540 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.26 |
| Shannon entropy | 0.51676 |
| G+C content | 0.37227 |
| Mean single sequence MFE | -22.29 |
| Consensus MFE | -6.58 |
| Energy contribution | -7.59 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15448443 97 - 27905053 UAAUCUAGGUGUUGUUAAUAUUAGCCCAACAAAUUAAUACAGUCCCAAAAAUGGUGUUCGUAAUUCUCGCCGCUGAUUUGUUAACGCCUCUUGAUUU .((((.((((((((.(((.((((((......(((((..(((...(((....))))))...)))))......))))))))).))))))))...)))). ( -20.70, z-score = -2.53, R) >droSim1.chr3R 21493921 97 + 27517382 UAAUCUAGGUGUUGUUAAUAUUAGCCCAACAAAUUAAUACAGUCCCAAAAAUGGUGUUCGUAAUUCUCGCCGCUGAUUUGUUAACGCCUCUUGAUUU .((((.((((((((.(((.((((((......(((((..(((...(((....))))))...)))))......))))))))).))))))))...)))). ( -20.70, z-score = -2.53, R) >droSec1.super_25 499197 97 + 827797 UAAUCUAGGUGUUGUUAAUAUUAGCCCAACAAAUUAAUACAGUCCCAAAAAUGGUGUUCGUAAUUCUCGCCGCUUAUUUGUUAACACCUCUUGAUUU .((((.((((((((.(((....(((......(((((..(((...(((....))))))...)))))......)))...))).))))))))...)))). ( -17.90, z-score = -2.11, R) >droYak2.chr3R 4219289 97 - 28832112 UAAUCUAGGUGCUGUUGAUAUUGGCCCAACAAAUUAAUACAGUCCCAAAGACGGUGUUCAUAAUUCUCGCCCCUGAUUUAUUAACGCCUCUUGAUUU .((((..((..((((((((.(((......)))))))..))))..)).((((.((((((.((((.((........)).)))).)))))))))))))). ( -24.70, z-score = -3.25, R) >droEre2.scaffold_4770 11552664 96 + 17746568 UAAUCUAGGUGCUGUUGAUAUUGGCCCAACAAAUUAAUACAG-CCCAAAGACGGCGUUGGCAAUUCUCGCCCCUGAUUUGUUAACGCCUCUCGAUUU .((((..((.(((((((((.(((......)))))))..))))-)))..(((.(((((((((((.((........)).)))))))))))))).)))). ( -31.80, z-score = -4.10, R) >droAna3.scaffold_13340 8745464 90 + 23697760 UAAUCUAGGUGUUGCUAAUAUUGGCCAAACGAAUUAAUAUAGCUCCAAAAAUGAU------AAUUCUCGCCUCGGAUUGGUUAACGCCU-UUGAUUU .((((.(((((((((((((...(((.....((((((.(((..........))).)------)))))..)))....))))).))))))))-..)))). ( -21.80, z-score = -2.41, R) >droMoj3.scaffold_6540 19208708 86 + 34148556 ---ACAAGUAGGUGUUAAAUUUAGC---AUUGGCAACUGUAAAGCCAGAUGUUUCAAUUGUUAUUAUAGUU-----UCUGUAAAUGCCUGGCCAGAU ---....((..((((((....))))---))..))..(((....(((((..(((((((((((....))))).-----..)).))))..)))))))).. ( -18.40, z-score = -0.59, R) >consensus UAAUCUAGGUGUUGUUAAUAUUAGCCCAACAAAUUAAUACAGUCCCAAAAAUGGUGUUCGUAAUUCUCGCCGCUGAUUUGUUAACGCCUCUUGAUUU .......((..((((....(((.(.....).)))....))))..))......((((((..(((.((........)).)))..))))))......... ( -6.58 = -7.59 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:06 2011