| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,412,914 – 15,413,016 |
| Length | 102 |
| Max. P | 0.659483 |
| Location | 15,412,914 – 15,413,016 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 64.60 |
| Shannon entropy | 0.63755 |
| G+C content | 0.40890 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -6.64 |
| Energy contribution | -6.62 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15412914 102 + 27905053 -------CCCCUGCUUAAAUCGCAAUUCUCUUUGCAGUCAUCGCCUGGCAAAAUGUCAA------UUUAAGGUACACAUUUGUGCCAUUUCUCUGGCAU-UUACUUACCUCCUGUG- -------..............((((......)))).((((.....)))).((((((((.------...((((((((....)))))).))....))))))-))..............- ( -20.30, z-score = -1.85, R) >droEre2.scaffold_4770 11518906 78 - 17746568 --------------------------UCGCUUUGCAUUCAUCGCCUGGCAAAAUGUCAA------UUUAAGGCAUACAUUUCUGCCAUUUCUGUGGCAU-UUAC----CUCCUGU-- --------------------------..(((..((.......))..))).((((((((.------...((((((........)))).))....))))))-))..----.......-- ( -17.70, z-score = -1.64, R) >droYak2.chr3R 4165047 96 + 28832112 --------CCCUGCU-AAAUCGCAUUUCUCUUUGCAUUAACCGAAUGGCAAAAUGUCAA------UUUAAGGUAUACAUUUCUGCCAUUUCUGUGGCAU-UAAC----CUCCCGUG- --------...((((-(....(((........))).......((((((((((((((..(------(.....))..)))))).))))))))...))))).-....----........- ( -19.40, z-score = -1.94, R) >droSec1.super_25 463992 102 - 827797 -------CCCCUGCUUUAAUAGCAAUUCUCUUUGCAGUCAUCGCCUGGCAAAAUGUCAA------UUUAAGGUUCACAUUCGUGCCAUUUCUCUGGCAU-UUACUUACCUCCUGUG- -------....((((.....)))).........((((........((((.....)))).------....((((........((((((......))))))-......)))).)))).- ( -19.44, z-score = -1.65, R) >droSim1.chr3R 21457970 102 - 27517382 -------CCCCUGCUUAAAUCGCAAUUCUCUUUGCAGUCAUCGCCUGGCAAAAUGUCAA------UUUAAGGUACACAUUCGUGCCAUUUCCCUGGCAU-UUACUUACCUCCUGUG- -------..............((((......)))).((((.....)))).((((((((.------...(((((((......))))).))....))))))-))..............- ( -19.70, z-score = -1.75, R) >droWil1.scaffold_181130 4245293 116 + 16660200 AAACAGAAAAAAACACAAAAAAACAAAUUAAGUGUGACCAGAAUUCACUAGAAUGCCAAGAACAGCUAUAGUCACACAUUAA-GAAAGUGCUCUAAUUUAUUGCAUCCUUUAUGUUG .....................((((......(((((((....((((....))))((........))....)))))))....(-((..((((...........))))..))).)))). ( -16.50, z-score = -0.62, R) >consensus _______CCCCUGCUUAAAUCGCAAUUCUCUUUGCAGUCAUCGCCUGGCAAAAUGUCAA______UUUAAGGUACACAUUUGUGCCAUUUCUCUGGCAU_UUACUUACCUCCUGUG_ ..........................................(((((((.....))))............((((........))))........))).................... ( -6.64 = -6.62 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:03 2011