| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,402,122 – 15,402,214 |
| Length | 92 |
| Max. P | 0.846379 |
| Location | 15,402,122 – 15,402,214 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 96.50 |
| Shannon entropy | 0.06278 |
| G+C content | 0.54391 |
| Mean single sequence MFE | -34.72 |
| Consensus MFE | -30.60 |
| Energy contribution | -30.88 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15402122 92 - 27905053 AUCCGUCAGAUUGGCCAGAUCGUAGUGCUCCGCUGGCAACUCUAUCAAAAAGACGUGUCAAGAGUUGGCGGCGGCGUUUGGCUUUUCUUGUG ...((..(((..(((((((.((.......((((((.(((((((..((........))...))))))).)))))))))))))))..)))..)) ( -34.11, z-score = -2.53, R) >droSim1.chr3R 21446800 91 + 27517382 AUCCGCCAGAUUGGCCAGAUCGGAGUGCUCCGCUGGCAACUCUAUC-AAAAGACGUGUCAAGAGUUGGCGGCGGCGUUUGGCUUUUCUUGUG ...(((.(((..((((((((.(((....)))((((.(((((((..(-(.......))...))))))).))))...))))))))..))).))) ( -36.60, z-score = -2.45, R) >droSec1.super_25 453526 91 + 827797 AUCCGCCAGAUCGGACAGAUCGGAGUGCUCCGCUGGCAACUCUAUC-AAAAGACGUGUCAAGAGUUGGCGGCGGCGUUUGGCUUUUCUUGUG ....((((((((.....)))).....((.((((((.(((((((..(-(.......))...))))))).)))))).)).)))).......... ( -33.60, z-score = -1.61, R) >droYak2.chr3R 4151693 91 - 28832112 AUCCGCCAGAUUGGCCAGAUCGGAGUGCUCCGCUGGCAACUCUAUC-AAAAGACGUGUCAAGAGUUGGCGGCGGCGUUUGGCUUUUCUUGUG ...(((.(((..((((((((.(((....)))((((.(((((((..(-(.......))...))))))).))))...))))))))..))).))) ( -36.60, z-score = -2.45, R) >droEre2.scaffold_4770 11508386 91 + 17746568 AUCCGCCAGCUUGCCCAGAUUGGAGUGCUCCGCUGGCAACUCUAUC-AAAAGACGUGUCAAGAGUUGGCGGCGGCGUUUGGCUUUUCUUGUG ....(((((..((((......(((....)))((((.(((((((..(-(.......))...))))))).)))))))).))))).......... ( -32.70, z-score = -1.25, R) >consensus AUCCGCCAGAUUGGCCAGAUCGGAGUGCUCCGCUGGCAACUCUAUC_AAAAGACGUGUCAAGAGUUGGCGGCGGCGUUUGGCUUUUCUUGUG ...(((.(((..(((((((.((.......((((((.(((((((.................))))))).)))))))))))))))..))).))) (-30.60 = -30.88 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:03 2011