| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,393,637 – 15,393,717 |
| Length | 80 |
| Max. P | 0.959302 |
| Location | 15,393,637 – 15,393,717 |
|---|---|
| Length | 80 |
| Sequences | 4 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 76.67 |
| Shannon entropy | 0.38229 |
| G+C content | 0.37969 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -14.74 |
| Energy contribution | -14.80 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15393637 80 + 27905053 GCAAGGCGAACUGAAUGAUUUCCCAGAUGCAUUUUUGGCUUUAGGAUUUUCCUUGGUUUGCCUUUUGGUUUCUGUUUUUA ..(((((((((..(..((..(((.(((.((.......))))).)))..))..)..)))))))))................ ( -21.00, z-score = -1.84, R) >droAna3.scaffold_13340 8691987 64 - 23697760 GCAAGGCAGAGUCAAAGAUUGCUGAGAUACAUUUUUGGUCUCUGGUCUUUUAUU---UUUUUUUUUG------------- ..(((((((((((((((((.(........))))))))).)))).))))).....---..........------------- ( -12.70, z-score = -0.86, R) >droSec1.super_25 444981 80 - 827797 GCAAGGCGAACUGAAUGAUUUCCCAGAUGCAUUUUUGGCUUUAGGAUUUUCGUUGGUUUGCCUUUUGGCUUCUGUUUUUA ((((((((((((.(((((..(((.(((.((.......))))).)))...)))))))))))))))...))........... ( -23.20, z-score = -2.37, R) >droSim1.chr3R 21438239 80 - 27517382 GCAAGGCGAACUGAAUGAUUUCCCAGAUGCAUUUUUGGCUUUAGGAUUUUCGUUGGUUUGCCUUUUGGUUUCUGUUUUUA ..((((((((((.(((((..(((.(((.((.......))))).)))...)))))))))))))))................ ( -22.20, z-score = -2.34, R) >consensus GCAAGGCGAACUGAAUGAUUUCCCAGAUGCAUUUUUGGCUUUAGGAUUUUCGUUGGUUUGCCUUUUGGUUUCUGUUUUUA ..((((((((((((..((..(((.(((.((.......))))).)))..))..))))))))))))................ (-14.74 = -14.80 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:02 2011